Results 1 - 20 of 70 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26441 | 3' | -68.1 | NC_005357.1 | + | 41742 | 1.09 | 0.000049 |
Target: 5'- uGGGCGGCCCGGCCGGCGCCGCCGUAGg -3' miRNA: 3'- -CCCGCCGGGCCGGCCGCGGCGGCAUC- -5' |
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26441 | 3' | -68.1 | NC_005357.1 | + | 8170 | 0.67 | 0.125461 |
Target: 5'- -uGCGGCCCaGGaaGGCGCUGgCGUc- -3' miRNA: 3'- ccCGCCGGG-CCggCCGCGGCgGCAuc -5' |
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26441 | 3' | -68.1 | NC_005357.1 | + | 31945 | 0.67 | 0.135617 |
Target: 5'- --aCGGCCCguucgGGCCGGUGCUGCgCGa-- -3' miRNA: 3'- cccGCCGGG-----CCGGCCGCGGCG-GCauc -5' |
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26441 | 3' | -68.1 | NC_005357.1 | + | 28098 | 0.66 | 0.17514 |
Target: 5'- -aGCaGGCCCGGCaguucagccaaGGCGCgCGCCa--- -3' miRNA: 3'- ccCG-CCGGGCCGg----------CCGCG-GCGGcauc -5' |
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26441 | 3' | -68.1 | NC_005357.1 | + | 36859 | 0.72 | 0.050679 |
Target: 5'- uGGCGGCCaGcGuuGGCGCCGUCGa-- -3' miRNA: 3'- cCCGCCGGgC-CggCCGCGGCGGCauc -5' |
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26441 | 3' | -68.1 | NC_005357.1 | + | 5100 | 0.72 | 0.059616 |
Target: 5'- cGGcCGGCCCagcguccggugcGGCUGGCGCCGuuGa-- -3' miRNA: 3'- cCC-GCCGGG------------CCGGCCGCGGCggCauc -5' |
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26441 | 3' | -68.1 | NC_005357.1 | + | 1752 | 0.71 | 0.071975 |
Target: 5'- cGGGCGGUcauggCCGGCCuGCGCCuggcgcgucggGCCGa-- -3' miRNA: 3'- -CCCGCCG-----GGCCGGcCGCGG-----------CGGCauc -5' |
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26441 | 3' | -68.1 | NC_005357.1 | + | 35187 | 0.7 | 0.073339 |
Target: 5'- uGGGCGGCCgacaucgccgagggUGaGCgCGGCGCagaugcuGCCGUGGa -3' miRNA: 3'- -CCCGCCGG--------------GC-CG-GCCGCGg------CGGCAUC- -5' |
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26441 | 3' | -68.1 | NC_005357.1 | + | 16615 | 0.69 | 0.092489 |
Target: 5'- cGGCGGCCCGGugcagaucaacgauaCCGagcGCGCCGCgCGc-- -3' miRNA: 3'- cCCGCCGGGCC---------------GGC---CGCGGCG-GCauc -5' |
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26441 | 3' | -68.1 | NC_005357.1 | + | 1870 | 0.68 | 0.119086 |
Target: 5'- aGGUucaGCCCguGGCCGGCGCUgGCCGg-- -3' miRNA: 3'- cCCGc--CGGG--CCGGCCGCGG-CGGCauc -5' |
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26441 | 3' | -68.1 | NC_005357.1 | + | 4808 | 0.69 | 0.093972 |
Target: 5'- aGGCcagcuuguagaGGUCgGgGCCGGCGCCGUCGUc- -3' miRNA: 3'- cCCG-----------CCGGgC-CGGCCGCGGCGGCAuc -5' |
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26441 | 3' | -68.1 | NC_005357.1 | + | 36027 | 0.7 | 0.084497 |
Target: 5'- uGGGCcgcgacuacaccGGgCCGGCCGGCcugcgccugauuGCCGaCGUGGg -3' miRNA: 3'- -CCCG------------CCgGGCCGGCCG------------CGGCgGCAUC- -5' |
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26441 | 3' | -68.1 | NC_005357.1 | + | 14593 | 0.77 | 0.019975 |
Target: 5'- -aGCGGCgCGGCCGGCGCCaCCGcGGg -3' miRNA: 3'- ccCGCCGgGCCGGCCGCGGcGGCaUC- -5' |
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26441 | 3' | -68.1 | NC_005357.1 | + | 15088 | 0.69 | 0.102538 |
Target: 5'- aGGuCGGCCCGGCCuacguggaaagcaacGcGCGCCugugggcGUCGUGGg -3' miRNA: 3'- cCC-GCCGGGCCGG---------------C-CGCGG-------CGGCAUC- -5' |
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26441 | 3' | -68.1 | NC_005357.1 | + | 18680 | 0.74 | 0.041894 |
Target: 5'- cGGUGGCgCCGGCaUGGCGCUGCUGc-- -3' miRNA: 3'- cCCGCCG-GGCCG-GCCGCGGCGGCauc -5' |
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26441 | 3' | -68.1 | NC_005357.1 | + | 10062 | 0.7 | 0.080108 |
Target: 5'- uGGGCGGCCgGGgccUCGGCGgCGaCCGcAGc -3' miRNA: 3'- -CCCGCCGGgCC---GGCCGCgGC-GGCaUC- -5' |
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26441 | 3' | -68.1 | NC_005357.1 | + | 30402 | 0.68 | 0.107233 |
Target: 5'- uGGGCaagaccucgccGGCCaCGGCC-GCGCUGCUGg-- -3' miRNA: 3'- -CCCG-----------CCGG-GCCGGcCGCGGCGGCauc -5' |
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26441 | 3' | -68.1 | NC_005357.1 | + | 39990 | 0.67 | 0.13215 |
Target: 5'- -cGUGGCgCCgaucuucgaGGCCGGCcuGCUGCCGUAc -3' miRNA: 3'- ccCGCCG-GG---------CCGGCCG--CGGCGGCAUc -5' |
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26441 | 3' | -68.1 | NC_005357.1 | + | 41457 | 0.73 | 0.043051 |
Target: 5'- aGGCGGCCaaguGGCUGcaaGCUGCCGUGGg -3' miRNA: 3'- cCCGCCGGg---CCGGCcg-CGGCGGCAUC- -5' |
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26441 | 3' | -68.1 | NC_005357.1 | + | 23953 | 0.71 | 0.07007 |
Target: 5'- cGGUGGacgaaUCGGCCGaCGCCGCCGgcGc -3' miRNA: 3'- cCCGCCg----GGCCGGCcGCGGCGGCauC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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