Results 61 - 80 of 89 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26442 | 5' | -58.2 | NC_005357.1 | + | 32635 | 0.67 | 0.405136 |
Target: 5'- aCUGguUCGGCgUGCgCgACCUGGCCGc -3' miRNA: 3'- -GAUguGGUUGgACG-GgUGGACCGGCu -5' |
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26442 | 5' | -58.2 | NC_005357.1 | + | 14353 | 0.67 | 0.411674 |
Target: 5'- -gACGCCGcggccACCUGCCCGCUguucgagcagaccgUcGCCGAc -3' miRNA: 3'- gaUGUGGU-----UGGACGGGUGG--------------AcCGGCU- -5' |
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26442 | 5' | -58.2 | NC_005357.1 | + | 23735 | 0.67 | 0.414497 |
Target: 5'- gCUGCuGCUGACCgagGCCCGCgUgguguaacaGGCCGGg -3' miRNA: 3'- -GAUG-UGGUUGGa--CGGGUGgA---------CCGGCU- -5' |
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26442 | 5' | -58.2 | NC_005357.1 | + | 39993 | 0.67 | 0.414497 |
Target: 5'- -gGCGCCGAUCUucgagGCCgGCCUGcuGCCGu -3' miRNA: 3'- gaUGUGGUUGGA-----CGGgUGGAC--CGGCu -5' |
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26442 | 5' | -58.2 | NC_005357.1 | + | 5508 | 0.67 | 0.414497 |
Target: 5'- -aGCGCCAACUcggUGCCUugguaguuCCaGGCCGGc -3' miRNA: 3'- gaUGUGGUUGG---ACGGGu-------GGaCCGGCU- -5' |
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26442 | 5' | -58.2 | NC_005357.1 | + | 13231 | 0.67 | 0.414497 |
Target: 5'- -cGCGuCCGACCUGCCggucauCACCgaGGCCc- -3' miRNA: 3'- gaUGU-GGUUGGACGG------GUGGa-CCGGcu -5' |
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26442 | 5' | -58.2 | NC_005357.1 | + | 33868 | 0.67 | 0.414497 |
Target: 5'- -cGCGCCuguCgCUGCCCGCCaucGGCgCGGc -3' miRNA: 3'- gaUGUGGuu-G-GACGGGUGGa--CCG-GCU- -5' |
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26442 | 5' | -58.2 | NC_005357.1 | + | 22642 | 0.67 | 0.418278 |
Target: 5'- uCUACcggGCCGGCCUGgcaaucagugaagaCCGCCucgUGGCCGGc -3' miRNA: 3'- -GAUG---UGGUUGGACg-------------GGUGG---ACCGGCU- -5' |
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26442 | 5' | -58.2 | NC_005357.1 | + | 1763 | 0.67 | 0.423989 |
Target: 5'- ---gGCCGGCCUGCgCCugGCgCgucgGGCCGAu -3' miRNA: 3'- gaugUGGUUGGACG-GG--UG-Ga---CCGGCU- -5' |
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26442 | 5' | -58.2 | NC_005357.1 | + | 37321 | 0.67 | 0.423989 |
Target: 5'- -gGCGCCAGCC-GCaccggaCGCUgGGCCGGc -3' miRNA: 3'- gaUGUGGUUGGaCGg-----GUGGaCCGGCU- -5' |
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26442 | 5' | -58.2 | NC_005357.1 | + | 20737 | 0.67 | 0.423989 |
Target: 5'- -aACcUCGACCUGUCgCACCUucuGGCUGAc -3' miRNA: 3'- gaUGuGGUUGGACGG-GUGGA---CCGGCU- -5' |
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26442 | 5' | -58.2 | NC_005357.1 | + | 35171 | 0.67 | 0.43361 |
Target: 5'- gCUGCACaagGCCggcgacaucgGCCCgcGCCagUGGCCGAa -3' miRNA: 3'- -GAUGUGgu-UGGa---------CGGG--UGG--ACCGGCU- -5' |
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26442 | 5' | -58.2 | NC_005357.1 | + | 21948 | 0.66 | 0.443357 |
Target: 5'- -aACACCAACCgaugGCUaugGCCUucGCCGAa -3' miRNA: 3'- gaUGUGGUUGGa---CGGg--UGGAc-CGGCU- -5' |
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26442 | 5' | -58.2 | NC_005357.1 | + | 36896 | 0.66 | 0.443357 |
Target: 5'- aUugACCAGaagCUGCCgGCCUGGaacuaccaggcaCCGAg -3' miRNA: 3'- gAugUGGUUg--GACGGgUGGACC------------GGCU- -5' |
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26442 | 5' | -58.2 | NC_005357.1 | + | 24760 | 0.66 | 0.443357 |
Target: 5'- cCUACGcCCAGCCcGCCgaCGCCaucaagaucgUGGCCGu -3' miRNA: 3'- -GAUGU-GGUUGGaCGG--GUGG----------ACCGGCu -5' |
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26442 | 5' | -58.2 | NC_005357.1 | + | 37605 | 0.66 | 0.443357 |
Target: 5'- aCUACGgCGACCUG-UCGCC-GGCCa- -3' miRNA: 3'- -GAUGUgGUUGGACgGGUGGaCCGGcu -5' |
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26442 | 5' | -58.2 | NC_005357.1 | + | 18422 | 0.66 | 0.453226 |
Target: 5'- aUugGCCGACgC-GCCCACCuucgccagucugUGcGCCGAa -3' miRNA: 3'- gAugUGGUUG-GaCGGGUGG------------AC-CGGCU- -5' |
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26442 | 5' | -58.2 | NC_005357.1 | + | 12206 | 0.66 | 0.453226 |
Target: 5'- -cGCGCU-GCCUGCC--CCUGGUCGGg -3' miRNA: 3'- gaUGUGGuUGGACGGguGGACCGGCU- -5' |
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26442 | 5' | -58.2 | NC_005357.1 | + | 13781 | 0.66 | 0.453226 |
Target: 5'- -gGCACCGAUcuggcaCUGCgCGCggaaCUGGCCGGc -3' miRNA: 3'- gaUGUGGUUG------GACGgGUG----GACCGGCU- -5' |
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26442 | 5' | -58.2 | NC_005357.1 | + | 36053 | 0.66 | 0.46221 |
Target: 5'- -gGCgGCCGACCUgguguaacccagcGCCCcgGCCUucgGGCCGGg -3' miRNA: 3'- gaUG-UGGUUGGA-------------CGGG--UGGA---CCGGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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