Results 61 - 80 of 89 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26442 | 5' | -58.2 | NC_005357.1 | + | 38377 | 0.7 | 0.247697 |
Target: 5'- cCUGgGCCGcugGCCUGCCgcuCGCCgcGGCCGGc -3' miRNA: 3'- -GAUgUGGU---UGGACGG---GUGGa-CCGGCU- -5' |
|||||||
26442 | 5' | -58.2 | NC_005357.1 | + | 988 | 0.71 | 0.241326 |
Target: 5'- cCUuCACCGucGCCcgcUGCCCGCgccaCUGGCCGGg -3' miRNA: 3'- -GAuGUGGU--UGG---ACGGGUG----GACCGGCU- -5' |
|||||||
26442 | 5' | -58.2 | NC_005357.1 | + | 22942 | 0.71 | 0.241326 |
Target: 5'- -cGCAgCGGCCUGCCaccggCACCUGGCg-- -3' miRNA: 3'- gaUGUgGUUGGACGG-----GUGGACCGgcu -5' |
|||||||
26442 | 5' | -58.2 | NC_005357.1 | + | 41792 | 0.71 | 0.236948 |
Target: 5'- -gGCACCGACUcgacgccggacgccgUGUCCACggcgcugCUGGCCGAc -3' miRNA: 3'- gaUGUGGUUGG---------------ACGGGUG-------GACCGGCU- -5' |
|||||||
26442 | 5' | -58.2 | NC_005357.1 | + | 10914 | 0.71 | 0.235092 |
Target: 5'- -aAUGgCGACCUGCCCGCCgguuugcagGGCCu- -3' miRNA: 3'- gaUGUgGUUGGACGGGUGGa--------CCGGcu -5' |
|||||||
26442 | 5' | -58.2 | NC_005357.1 | + | 21127 | 0.71 | 0.235092 |
Target: 5'- --gUAUCGACgCUGCCCAgCUUGGCCGc -3' miRNA: 3'- gauGUGGUUG-GACGGGU-GGACCGGCu -5' |
|||||||
26442 | 5' | -58.2 | NC_005357.1 | + | 968 | 0.71 | 0.235092 |
Target: 5'- -cACGgCAGCUUGCagCCACUUGGCCGc -3' miRNA: 3'- gaUGUgGUUGGACG--GGUGGACCGGCu -5' |
|||||||
26442 | 5' | -58.2 | NC_005357.1 | + | 31003 | 0.71 | 0.228993 |
Target: 5'- -cACGCgCGACCUGUCCacgggcuuGCC-GGCCGAg -3' miRNA: 3'- gaUGUG-GUUGGACGGG--------UGGaCCGGCU- -5' |
|||||||
26442 | 5' | -58.2 | NC_005357.1 | + | 27238 | 0.71 | 0.228993 |
Target: 5'- uUGCuguCCAGCCggcGCCCcaggcuCUUGGCCGAg -3' miRNA: 3'- gAUGu--GGUUGGa--CGGGu-----GGACCGGCU- -5' |
|||||||
26442 | 5' | -58.2 | NC_005357.1 | + | 24556 | 0.71 | 0.223029 |
Target: 5'- uCUGCAauCUGGCCcugGCCUACCUGGgCGAc -3' miRNA: 3'- -GAUGU--GGUUGGa--CGGGUGGACCgGCU- -5' |
|||||||
26442 | 5' | -58.2 | NC_005357.1 | + | 23288 | 0.71 | 0.22244 |
Target: 5'- gUGCGCCAcgaauGCCUguuugcgGCCgGCaCUGGCCGGg -3' miRNA: 3'- gAUGUGGU-----UGGA-------CGGgUG-GACCGGCU- -5' |
|||||||
26442 | 5' | -58.2 | NC_005357.1 | + | 14989 | 0.71 | 0.211497 |
Target: 5'- -aGCGCCAggGCCUGCggCCGCCgGGCgCGGu -3' miRNA: 3'- gaUGUGGU--UGGACG--GGUGGaCCG-GCU- -5' |
|||||||
26442 | 5' | -58.2 | NC_005357.1 | + | 30411 | 0.71 | 0.211497 |
Target: 5'- cCU-CGCCGGCCacgGCCgcgCugCUGGCCGAc -3' miRNA: 3'- -GAuGUGGUUGGa--CGG---GugGACCGGCU- -5' |
|||||||
26442 | 5' | -58.2 | NC_005357.1 | + | 33113 | 0.71 | 0.211497 |
Target: 5'- -cGCGCCGACgUGCgCCGCCaGGUCGc -3' miRNA: 3'- gaUGUGGUUGgACG-GGUGGaCCGGCu -5' |
|||||||
26442 | 5' | -58.2 | NC_005357.1 | + | 6630 | 0.73 | 0.179944 |
Target: 5'- --cCGCCAGCUUcGCgCGCUUGGCCGGa -3' miRNA: 3'- gauGUGGUUGGA-CGgGUGGACCGGCU- -5' |
|||||||
26442 | 5' | -58.2 | NC_005357.1 | + | 38063 | 0.73 | 0.175109 |
Target: 5'- gCUGCGCauccGCCUGCCguCC-GGCCGAu -3' miRNA: 3'- -GAUGUGgu--UGGACGGguGGaCCGGCU- -5' |
|||||||
26442 | 5' | -58.2 | NC_005357.1 | + | 39744 | 0.73 | 0.169925 |
Target: 5'- aCUACGaCAACCUGCCguggcugaucgaaCACCUGGgCGAc -3' miRNA: 3'- -GAUGUgGUUGGACGG-------------GUGGACCgGCU- -5' |
|||||||
26442 | 5' | -58.2 | NC_005357.1 | + | 31139 | 0.73 | 0.161293 |
Target: 5'- ---aACCGuuuuCC-GCCUACCUGGCCGAg -3' miRNA: 3'- gaugUGGUu---GGaCGGGUGGACCGGCU- -5' |
|||||||
26442 | 5' | -58.2 | NC_005357.1 | + | 29638 | 0.73 | 0.156911 |
Target: 5'- -cGCACCAGCCUGUCUGa--GGCCGAc -3' miRNA: 3'- gaUGUGGUUGGACGGGUggaCCGGCU- -5' |
|||||||
26442 | 5' | -58.2 | NC_005357.1 | + | 36036 | 0.74 | 0.148467 |
Target: 5'- aCUACACCgGGCCgGCCgGCCUGcGCCuGAu -3' miRNA: 3'- -GAUGUGG-UUGGaCGGgUGGAC-CGG-CU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home