miRNA display CGI


Results 41 - 60 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26442 5' -58.2 NC_005357.1 + 41958 0.68 0.343481
Target:  5'- -gGCAuCCGACCgcgacagcGCCCGCaagCUGGCCGc -3'
miRNA:   3'- gaUGU-GGUUGGa-------CGGGUG---GACCGGCu -5'
26442 5' -58.2 NC_005357.1 + 15107 0.68 0.335244
Target:  5'- -cGCGCCGuaauAgCUGCCUACCaGGcCCGAc -3'
miRNA:   3'- gaUGUGGU----UgGACGGGUGGaCC-GGCU- -5'
26442 5' -58.2 NC_005357.1 + 38240 0.69 0.327152
Target:  5'- -cGCgGCCAACaUGCCCGCCaucgaggcGGCCGGc -3'
miRNA:   3'- gaUG-UGGUUGgACGGGUGGa-------CCGGCU- -5'
26442 5' -58.2 NC_005357.1 + 9496 0.69 0.327152
Target:  5'- -cAUGCCAGCCUGuUCCGCCgUGG-CGAa -3'
miRNA:   3'- gaUGUGGUUGGAC-GGGUGG-ACCgGCU- -5'
26442 5' -58.2 NC_005357.1 + 22450 0.69 0.326351
Target:  5'- uCUACGCggacaucggCGGCCUGCCCgaaaccuggguuGCCUcguccacGGCCGAc -3'
miRNA:   3'- -GAUGUG---------GUUGGACGGG------------UGGA-------CCGGCU- -5'
26442 5' -58.2 NC_005357.1 + 34824 0.69 0.319205
Target:  5'- gCUGCGCgaccaCGugCUGUCCACCgucGCCGAc -3'
miRNA:   3'- -GAUGUG-----GUugGACGGGUGGac-CGGCU- -5'
26442 5' -58.2 NC_005357.1 + 17784 0.69 0.311405
Target:  5'- -aACACCAuCCUgGCCCGCC-GGCaCGc -3'
miRNA:   3'- gaUGUGGUuGGA-CGGGUGGaCCG-GCu -5'
26442 5' -58.2 NC_005357.1 + 1866 0.69 0.311405
Target:  5'- uUGCAgguUCAGCCcgugGCCgGCgCUGGCCGGg -3'
miRNA:   3'- gAUGU---GGUUGGa---CGGgUG-GACCGGCU- -5'
26442 5' -58.2 NC_005357.1 + 17849 0.69 0.311405
Target:  5'- -cACGCCGGacgGCCCgACCgUGGCCGGc -3'
miRNA:   3'- gaUGUGGUUggaCGGG-UGG-ACCGGCU- -5'
26442 5' -58.2 NC_005357.1 + 20833 0.69 0.311405
Target:  5'- -gGCACCAAUCcGCagaugaccgCCACCgaagUGGCCGAg -3'
miRNA:   3'- gaUGUGGUUGGaCG---------GGUGG----ACCGGCU- -5'
26442 5' -58.2 NC_005357.1 + 33311 0.69 0.311405
Target:  5'- -aACGCUAucuggcgauACCUGCCCACCggcaagaacGGCCu- -3'
miRNA:   3'- gaUGUGGU---------UGGACGGGUGGa--------CCGGcu -5'
26442 5' -58.2 NC_005357.1 + 19168 0.69 0.310633
Target:  5'- -gACACCGACCUGaccaugcuguucCCCAgCgaggcgcggucggUGGCCGAg -3'
miRNA:   3'- gaUGUGGUUGGAC------------GGGUgG-------------ACCGGCU- -5'
26442 5' -58.2 NC_005357.1 + 13855 0.69 0.30375
Target:  5'- gCUGCcggugGCCGACgUGCgCGCCgcgaUGGCCGGc -3'
miRNA:   3'- -GAUG-----UGGUUGgACGgGUGG----ACCGGCU- -5'
26442 5' -58.2 NC_005357.1 + 26257 0.69 0.288876
Target:  5'- -gGCACgGgcACCcGCCgGCCUGGUCGGc -3'
miRNA:   3'- gaUGUGgU--UGGaCGGgUGGACCGGCU- -5'
26442 5' -58.2 NC_005357.1 + 19240 0.7 0.280942
Target:  5'- -gAgGCCGACCUGCUgcugucgCACCagcagggGGCCGAa -3'
miRNA:   3'- gaUgUGGUUGGACGG-------GUGGa------CCGGCU- -5'
26442 5' -58.2 NC_005357.1 + 39838 0.7 0.274581
Target:  5'- cCU-CGCCAACCUGCUgGCCUugcaaGCUGAa -3'
miRNA:   3'- -GAuGUGGUUGGACGGgUGGAc----CGGCU- -5'
26442 5' -58.2 NC_005357.1 + 24133 0.7 0.274581
Target:  5'- gUAguCCAGCCggcUGCgCGCCUGGCCc- -3'
miRNA:   3'- gAUguGGUUGG---ACGgGUGGACCGGcu -5'
26442 5' -58.2 NC_005357.1 + 31436 0.7 0.267648
Target:  5'- aUACGCuCAugCaauCCgGCCUGGCCGAa -3'
miRNA:   3'- gAUGUG-GUugGac-GGgUGGACCGGCU- -5'
26442 5' -58.2 NC_005357.1 + 29245 0.7 0.254207
Target:  5'- -aACGCCGGCCaagggcGCCCAgCgcGGCCGAc -3'
miRNA:   3'- gaUGUGGUUGGa-----CGGGUgGa-CCGGCU- -5'
26442 5' -58.2 NC_005357.1 + 40325 0.7 0.254207
Target:  5'- uCUAUACCGACgacacgGCgaCCACCUGGgCCGAu -3'
miRNA:   3'- -GAUGUGGUUGga----CG--GGUGGACC-GGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.