miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26445 5' -58.6 NC_005357.1 + 1737 1.05 0.000488
Target:  5'- uACCUGCGCGGCAGCAUCACGCGCAAAc -3'
miRNA:   3'- -UGGACGCGCCGUCGUAGUGCGCGUUU- -5'
26445 5' -58.6 NC_005357.1 + 35955 0.79 0.050988
Target:  5'- gGCCUGCGCGGCGuGCAguUCcUGCGCGAc -3'
miRNA:   3'- -UGGACGCGCCGU-CGU--AGuGCGCGUUu -5'
26445 5' -58.6 NC_005357.1 + 26273 0.76 0.086709
Target:  5'- gGCCUG-GuCGGCucgcGCAUCGCGCGCGAu -3'
miRNA:   3'- -UGGACgC-GCCGu---CGUAGUGCGCGUUu -5'
26445 5' -58.6 NC_005357.1 + 4118 0.75 0.089275
Target:  5'- aGCCUGCGCuGCAGCGUUGCuucccgGCGCAu- -3'
miRNA:   3'- -UGGACGCGcCGUCGUAGUG------CGCGUuu -5'
26445 5' -58.6 NC_005357.1 + 8258 0.74 0.109043
Target:  5'- gGCCgUGCGCgaugaaaucgccGGCAGCAUCcgggcgcACGCGCAGGg -3'
miRNA:   3'- -UGG-ACGCG------------CCGUCGUAG-------UGCGCGUUU- -5'
26445 5' -58.6 NC_005357.1 + 8654 0.73 0.14141
Target:  5'- gGCCUucaucGCGCGGuCGGCAUUGCGUGCc-- -3'
miRNA:   3'- -UGGA-----CGCGCC-GUCGUAGUGCGCGuuu -5'
26445 5' -58.6 NC_005357.1 + 26366 0.73 0.137462
Target:  5'- cGCCgcGCGCGGCGGC--CACGUGCGc- -3'
miRNA:   3'- -UGGa-CGCGCCGUCGuaGUGCGCGUuu -5'
26445 5' -58.6 NC_005357.1 + 326 0.72 0.149618
Target:  5'- uACCgucagGCugGCGGUGGCGUCGCGCaGCAGg -3'
miRNA:   3'- -UGGa----CG--CGCCGUCGUAGUGCG-CGUUu -5'
26445 5' -58.6 NC_005357.1 + 37294 0.72 0.162744
Target:  5'- cGCCUGCGCGGCAcguuGCAguUCAacgGCGCc-- -3'
miRNA:   3'- -UGGACGCGCCGU----CGU--AGUg--CGCGuuu -5'
26445 5' -58.6 NC_005357.1 + 29817 0.71 0.192135
Target:  5'- uGCCgaGCGCGuCGGCGcCAUGCGCAAAu -3'
miRNA:   3'- -UGGa-CGCGCcGUCGUaGUGCGCGUUU- -5'
26445 5' -58.6 NC_005357.1 + 35183 0.71 0.190561
Target:  5'- gACCUGgGCGGCcGaCAUCGCcgagggugagcgcgGCGCAGAu -3'
miRNA:   3'- -UGGACgCGCCGuC-GUAGUG--------------CGCGUUU- -5'
26445 5' -58.6 NC_005357.1 + 35794 0.7 0.232207
Target:  5'- aACCUGUacguguccGCGcGCAGCGcCACGCGCc-- -3'
miRNA:   3'- -UGGACG--------CGC-CGUCGUaGUGCGCGuuu -5'
26445 5' -58.6 NC_005357.1 + 8559 0.7 0.226079
Target:  5'- cGCCgaugGCG-GGCAGCGaCAgGCGCGAc -3'
miRNA:   3'- -UGGa---CGCgCCGUCGUaGUgCGCGUUu -5'
26445 5' -58.6 NC_005357.1 + 14590 0.7 0.202371
Target:  5'- aGCagcgGCGCGGCcggcgccaccgcgGGCAgCGCGCGCGAGg -3'
miRNA:   3'- -UGga--CGCGCCG-------------UCGUaGUGCGCGUUU- -5'
26445 5' -58.6 NC_005357.1 + 20007 0.7 0.214232
Target:  5'- cGCCgucaagGCGUGGCuGGCGaacgUCACGCGCu-- -3'
miRNA:   3'- -UGGa-----CGCGCCG-UCGU----AGUGCGCGuuu -5'
26445 5' -58.6 NC_005357.1 + 9202 0.7 0.226079
Target:  5'- gGCCUGCuCGGCGGCG-CG-GCGCAc- -3'
miRNA:   3'- -UGGACGcGCCGUCGUaGUgCGCGUuu -5'
26445 5' -58.6 NC_005357.1 + 1036 0.7 0.208512
Target:  5'- gGCCacgGCcgGCGGCAGCAUguCGcCGCGAAc -3'
miRNA:   3'- -UGGa--CG--CGCCGUCGUAguGC-GCGUUU- -5'
26445 5' -58.6 NC_005357.1 + 14725 0.69 0.238475
Target:  5'- cCCUGCGCccGGUAGCcccaggcagUACGCGCAGc -3'
miRNA:   3'- uGGACGCG--CCGUCGua-------GUGCGCGUUu -5'
26445 5' -58.6 NC_005357.1 + 14231 0.69 0.25813
Target:  5'- uCCUugGCGCGGUuaaguGCGUCguccACGCGCAAc -3'
miRNA:   3'- uGGA--CGCGCCGu----CGUAG----UGCGCGUUu -5'
26445 5' -58.6 NC_005357.1 + 33738 0.69 0.271251
Target:  5'- aAUCUGCGCGGC-GCA-CACcugggcgGCGCAGc -3'
miRNA:   3'- -UGGACGCGCCGuCGUaGUG-------CGCGUUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.