Results 1 - 20 of 59 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26445 | 5' | -58.6 | NC_005357.1 | + | 326 | 0.72 | 0.149618 |
Target: 5'- uACCgucagGCugGCGGUGGCGUCGCGCaGCAGg -3' miRNA: 3'- -UGGa----CG--CGCCGUCGUAGUGCG-CGUUu -5' |
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26445 | 5' | -58.6 | NC_005357.1 | + | 454 | 0.68 | 0.286371 |
Target: 5'- -gCUGCGCGGcCAGCuugCGgGCGCu-- -3' miRNA: 3'- ugGACGCGCC-GUCGua-GUgCGCGuuu -5' |
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26445 | 5' | -58.6 | NC_005357.1 | + | 1036 | 0.7 | 0.208512 |
Target: 5'- gGCCacgGCcgGCGGCAGCAUguCGcCGCGAAc -3' miRNA: 3'- -UGGa--CG--CGCCGUCGUAguGC-GCGUUU- -5' |
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26445 | 5' | -58.6 | NC_005357.1 | + | 1102 | 0.67 | 0.367419 |
Target: 5'- gGCCgUGuCGC-GCGGCAUguCGCGCAu- -3' miRNA: 3'- -UGG-AC-GCGcCGUCGUAguGCGCGUuu -5' |
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26445 | 5' | -58.6 | NC_005357.1 | + | 1737 | 1.05 | 0.000488 |
Target: 5'- uACCUGCGCGGCAGCAUCACGCGCAAAc -3' miRNA: 3'- -UGGACGCGCCGUCGUAGUGCGCGUUU- -5' |
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26445 | 5' | -58.6 | NC_005357.1 | + | 1767 | 0.67 | 0.350014 |
Target: 5'- gGCCUGCGCcuGGC-GCGUCGgGC-CGAu -3' miRNA: 3'- -UGGACGCG--CCGuCGUAGUgCGcGUUu -5' |
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26445 | 5' | -58.6 | NC_005357.1 | + | 2214 | 0.67 | 0.341533 |
Target: 5'- cCCU-CGUcgGGUAGCAcCACGCGCAGc -3' miRNA: 3'- uGGAcGCG--CCGUCGUaGUGCGCGUUu -5' |
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26445 | 5' | -58.6 | NC_005357.1 | + | 2369 | 0.68 | 0.301381 |
Target: 5'- gGCCUGCacGUGGCAGaCGccCGCGUGCGu- -3' miRNA: 3'- -UGGACG--CGCCGUC-GUa-GUGCGCGUuu -5' |
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26445 | 5' | -58.6 | NC_005357.1 | + | 3108 | 0.67 | 0.358643 |
Target: 5'- gACCUGaUGCGGCGuCAUaGCGUGCGGu -3' miRNA: 3'- -UGGAC-GCGCCGUcGUAgUGCGCGUUu -5' |
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26445 | 5' | -58.6 | NC_005357.1 | + | 4118 | 0.75 | 0.089275 |
Target: 5'- aGCCUGCGCuGCAGCGUUGCuucccgGCGCAu- -3' miRNA: 3'- -UGGACGCGcCGUCGUAGUG------CGCGUuu -5' |
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26445 | 5' | -58.6 | NC_005357.1 | + | 5533 | 0.68 | 0.286371 |
Target: 5'- uCCagGC-CGGCAGCuucuggucaAUCACGCGCAu- -3' miRNA: 3'- uGGa-CGcGCCGUCG---------UAGUGCGCGUuu -5' |
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26445 | 5' | -58.6 | NC_005357.1 | + | 6485 | 0.67 | 0.367419 |
Target: 5'- cGCC-GCGCaGGCccGCAuUCACGCGCu-- -3' miRNA: 3'- -UGGaCGCG-CCGu-CGU-AGUGCGCGuuu -5' |
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26445 | 5' | -58.6 | NC_005357.1 | + | 8120 | 0.68 | 0.27909 |
Target: 5'- cACC-GCGCGGcCGGCGUUgguuguggGCGUGCGGGu -3' miRNA: 3'- -UGGaCGCGCC-GUCGUAG--------UGCGCGUUU- -5' |
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26445 | 5' | -58.6 | NC_005357.1 | + | 8258 | 0.74 | 0.109043 |
Target: 5'- gGCCgUGCGCgaugaaaucgccGGCAGCAUCcgggcgcACGCGCAGGg -3' miRNA: 3'- -UGG-ACGCG------------CCGUCGUAG-------UGCGCGUUU- -5' |
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26445 | 5' | -58.6 | NC_005357.1 | + | 8559 | 0.7 | 0.226079 |
Target: 5'- cGCCgaugGCG-GGCAGCGaCAgGCGCGAc -3' miRNA: 3'- -UGGa---CGCgCCGUCGUaGUgCGCGUUu -5' |
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26445 | 5' | -58.6 | NC_005357.1 | + | 8654 | 0.73 | 0.14141 |
Target: 5'- gGCCUucaucGCGCGGuCGGCAUUGCGUGCc-- -3' miRNA: 3'- -UGGA-----CGCGCC-GUCGUAGUGCGCGuuu -5' |
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26445 | 5' | -58.6 | NC_005357.1 | + | 9202 | 0.7 | 0.226079 |
Target: 5'- gGCCUGCuCGGCGGCG-CG-GCGCAc- -3' miRNA: 3'- -UGGACGcGCCGUCGUaGUgCGCGUuu -5' |
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26445 | 5' | -58.6 | NC_005357.1 | + | 9628 | 0.66 | 0.423095 |
Target: 5'- gGCCUucaaGuCGCGGUacacguugAGCAgcCACGCGCGGAa -3' miRNA: 3'- -UGGA----C-GCGCCG--------UCGUa-GUGCGCGUUU- -5' |
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26445 | 5' | -58.6 | NC_005357.1 | + | 10094 | 0.66 | 0.394622 |
Target: 5'- gACCUGgGCGGCGGuUGUCGgGaCGCc-- -3' miRNA: 3'- -UGGACgCGCCGUC-GUAGUgC-GCGuuu -5' |
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26445 | 5' | -58.6 | NC_005357.1 | + | 10864 | 0.67 | 0.324212 |
Target: 5'- cCCUGCGUGGCuucggucGGCGcgaUGCGCGCGGc -3' miRNA: 3'- uGGACGCGCCG-------UCGUa--GUGCGCGUUu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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