miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26445 5' -58.6 NC_005357.1 + 326 0.72 0.149618
Target:  5'- uACCgucagGCugGCGGUGGCGUCGCGCaGCAGg -3'
miRNA:   3'- -UGGa----CG--CGCCGUCGUAGUGCG-CGUUu -5'
26445 5' -58.6 NC_005357.1 + 454 0.68 0.286371
Target:  5'- -gCUGCGCGGcCAGCuugCGgGCGCu-- -3'
miRNA:   3'- ugGACGCGCC-GUCGua-GUgCGCGuuu -5'
26445 5' -58.6 NC_005357.1 + 1036 0.7 0.208512
Target:  5'- gGCCacgGCcgGCGGCAGCAUguCGcCGCGAAc -3'
miRNA:   3'- -UGGa--CG--CGCCGUCGUAguGC-GCGUUU- -5'
26445 5' -58.6 NC_005357.1 + 1102 0.67 0.367419
Target:  5'- gGCCgUGuCGC-GCGGCAUguCGCGCAu- -3'
miRNA:   3'- -UGG-AC-GCGcCGUCGUAguGCGCGUuu -5'
26445 5' -58.6 NC_005357.1 + 1737 1.05 0.000488
Target:  5'- uACCUGCGCGGCAGCAUCACGCGCAAAc -3'
miRNA:   3'- -UGGACGCGCCGUCGUAGUGCGCGUUU- -5'
26445 5' -58.6 NC_005357.1 + 1767 0.67 0.350014
Target:  5'- gGCCUGCGCcuGGC-GCGUCGgGC-CGAu -3'
miRNA:   3'- -UGGACGCG--CCGuCGUAGUgCGcGUUu -5'
26445 5' -58.6 NC_005357.1 + 2214 0.67 0.341533
Target:  5'- cCCU-CGUcgGGUAGCAcCACGCGCAGc -3'
miRNA:   3'- uGGAcGCG--CCGUCGUaGUGCGCGUUu -5'
26445 5' -58.6 NC_005357.1 + 2369 0.68 0.301381
Target:  5'- gGCCUGCacGUGGCAGaCGccCGCGUGCGu- -3'
miRNA:   3'- -UGGACG--CGCCGUC-GUa-GUGCGCGUuu -5'
26445 5' -58.6 NC_005357.1 + 3108 0.67 0.358643
Target:  5'- gACCUGaUGCGGCGuCAUaGCGUGCGGu -3'
miRNA:   3'- -UGGAC-GCGCCGUcGUAgUGCGCGUUu -5'
26445 5' -58.6 NC_005357.1 + 4118 0.75 0.089275
Target:  5'- aGCCUGCGCuGCAGCGUUGCuucccgGCGCAu- -3'
miRNA:   3'- -UGGACGCGcCGUCGUAGUG------CGCGUuu -5'
26445 5' -58.6 NC_005357.1 + 5533 0.68 0.286371
Target:  5'- uCCagGC-CGGCAGCuucuggucaAUCACGCGCAu- -3'
miRNA:   3'- uGGa-CGcGCCGUCG---------UAGUGCGCGUuu -5'
26445 5' -58.6 NC_005357.1 + 6485 0.67 0.367419
Target:  5'- cGCC-GCGCaGGCccGCAuUCACGCGCu-- -3'
miRNA:   3'- -UGGaCGCG-CCGu-CGU-AGUGCGCGuuu -5'
26445 5' -58.6 NC_005357.1 + 8120 0.68 0.27909
Target:  5'- cACC-GCGCGGcCGGCGUUgguuguggGCGUGCGGGu -3'
miRNA:   3'- -UGGaCGCGCC-GUCGUAG--------UGCGCGUUU- -5'
26445 5' -58.6 NC_005357.1 + 8258 0.74 0.109043
Target:  5'- gGCCgUGCGCgaugaaaucgccGGCAGCAUCcgggcgcACGCGCAGGg -3'
miRNA:   3'- -UGG-ACGCG------------CCGUCGUAG-------UGCGCGUUU- -5'
26445 5' -58.6 NC_005357.1 + 8559 0.7 0.226079
Target:  5'- cGCCgaugGCG-GGCAGCGaCAgGCGCGAc -3'
miRNA:   3'- -UGGa---CGCgCCGUCGUaGUgCGCGUUu -5'
26445 5' -58.6 NC_005357.1 + 8654 0.73 0.14141
Target:  5'- gGCCUucaucGCGCGGuCGGCAUUGCGUGCc-- -3'
miRNA:   3'- -UGGA-----CGCGCC-GUCGUAGUGCGCGuuu -5'
26445 5' -58.6 NC_005357.1 + 9202 0.7 0.226079
Target:  5'- gGCCUGCuCGGCGGCG-CG-GCGCAc- -3'
miRNA:   3'- -UGGACGcGCCGUCGUaGUgCGCGUuu -5'
26445 5' -58.6 NC_005357.1 + 9628 0.66 0.423095
Target:  5'- gGCCUucaaGuCGCGGUacacguugAGCAgcCACGCGCGGAa -3'
miRNA:   3'- -UGGA----C-GCGCCG--------UCGUa-GUGCGCGUUU- -5'
26445 5' -58.6 NC_005357.1 + 10094 0.66 0.394622
Target:  5'- gACCUGgGCGGCGGuUGUCGgGaCGCc-- -3'
miRNA:   3'- -UGGACgCGCCGUC-GUAGUgC-GCGuuu -5'
26445 5' -58.6 NC_005357.1 + 10864 0.67 0.324212
Target:  5'- cCCUGCGUGGCuucggucGGCGcgaUGCGCGCGGc -3'
miRNA:   3'- uGGACGCGCCG-------UCGUa--GUGCGCGUUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.