Results 1 - 20 of 59 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26445 | 5' | -58.6 | NC_005357.1 | + | 2214 | 0.67 | 0.341533 |
Target: 5'- cCCU-CGUcgGGUAGCAcCACGCGCAGc -3' miRNA: 3'- uGGAcGCG--CCGUCGUaGUGCGCGUUu -5' |
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26445 | 5' | -58.6 | NC_005357.1 | + | 17368 | 0.68 | 0.27909 |
Target: 5'- cGCCUGCGacaGGUAugccuGCAUCGCGC-CGAc -3' miRNA: 3'- -UGGACGCg--CCGU-----CGUAGUGCGcGUUu -5' |
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26445 | 5' | -58.6 | NC_005357.1 | + | 8120 | 0.68 | 0.27909 |
Target: 5'- cACC-GCGCGGcCGGCGUUgguuguggGCGUGCGGGu -3' miRNA: 3'- -UGGaCGCGCC-GUCGUAG--------UGCGCGUUU- -5' |
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26445 | 5' | -58.6 | NC_005357.1 | + | 454 | 0.68 | 0.286371 |
Target: 5'- -gCUGCGCGGcCAGCuugCGgGCGCu-- -3' miRNA: 3'- ugGACGCGCC-GUCGua-GUgCGCGuuu -5' |
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26445 | 5' | -58.6 | NC_005357.1 | + | 27800 | 0.68 | 0.286371 |
Target: 5'- cGCC-GCGCagccGCAGCAcguccUCGCGCGCGc- -3' miRNA: 3'- -UGGaCGCGc---CGUCGU-----AGUGCGCGUuu -5' |
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26445 | 5' | -58.6 | NC_005357.1 | + | 2369 | 0.68 | 0.301381 |
Target: 5'- gGCCUGCacGUGGCAGaCGccCGCGUGCGu- -3' miRNA: 3'- -UGGACG--CGCCGUC-GUa-GUGCGCGUuu -5' |
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26445 | 5' | -58.6 | NC_005357.1 | + | 26046 | 0.68 | 0.309111 |
Target: 5'- aGCCcGCGCGGCGgGCGcgcucCAUGCGCu-- -3' miRNA: 3'- -UGGaCGCGCCGU-CGUa----GUGCGCGuuu -5' |
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26445 | 5' | -58.6 | NC_005357.1 | + | 10864 | 0.67 | 0.324212 |
Target: 5'- cCCUGCGUGGCuucggucGGCGcgaUGCGCGCGGc -3' miRNA: 3'- uGGACGCGCCG-------UCGUa--GUGCGCGUUu -5' |
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26445 | 5' | -58.6 | NC_005357.1 | + | 25768 | 0.67 | 0.325022 |
Target: 5'- -gCUGgGCGGCGGCAaCgauggccgcgauGCGCGCGGc -3' miRNA: 3'- ugGACgCGCCGUCGUaG------------UGCGCGUUu -5' |
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26445 | 5' | -58.6 | NC_005357.1 | + | 33738 | 0.69 | 0.271251 |
Target: 5'- aAUCUGCGCGGC-GCA-CACcugggcgGCGCAGc -3' miRNA: 3'- -UGGACGCGCCGuCGUaGUG-------CGCGUUu -5' |
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26445 | 5' | -58.6 | NC_005357.1 | + | 14231 | 0.69 | 0.25813 |
Target: 5'- uCCUugGCGCGGUuaaguGCGUCguccACGCGCAAc -3' miRNA: 3'- uGGA--CGCGCCGu----CGUAG----UGCGCGUUu -5' |
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26445 | 5' | -58.6 | NC_005357.1 | + | 14725 | 0.69 | 0.238475 |
Target: 5'- cCCUGCGCccGGUAGCcccaggcagUACGCGCAGc -3' miRNA: 3'- uGGACGCG--CCGUCGua-------GUGCGCGUUu -5' |
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26445 | 5' | -58.6 | NC_005357.1 | + | 26273 | 0.76 | 0.086709 |
Target: 5'- gGCCUG-GuCGGCucgcGCAUCGCGCGCGAu -3' miRNA: 3'- -UGGACgC-GCCGu---CGUAGUGCGCGUUu -5' |
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26445 | 5' | -58.6 | NC_005357.1 | + | 4118 | 0.75 | 0.089275 |
Target: 5'- aGCCUGCGCuGCAGCGUUGCuucccgGCGCAu- -3' miRNA: 3'- -UGGACGCGcCGUCGUAGUG------CGCGUuu -5' |
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26445 | 5' | -58.6 | NC_005357.1 | + | 8654 | 0.73 | 0.14141 |
Target: 5'- gGCCUucaucGCGCGGuCGGCAUUGCGUGCc-- -3' miRNA: 3'- -UGGA-----CGCGCC-GUCGUAGUGCGCGuuu -5' |
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26445 | 5' | -58.6 | NC_005357.1 | + | 326 | 0.72 | 0.149618 |
Target: 5'- uACCgucagGCugGCGGUGGCGUCGCGCaGCAGg -3' miRNA: 3'- -UGGa----CG--CGCCGUCGUAGUGCG-CGUUu -5' |
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26445 | 5' | -58.6 | NC_005357.1 | + | 37294 | 0.72 | 0.162744 |
Target: 5'- cGCCUGCGCGGCAcguuGCAguUCAacgGCGCc-- -3' miRNA: 3'- -UGGACGCGCCGU----CGU--AGUg--CGCGuuu -5' |
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26445 | 5' | -58.6 | NC_005357.1 | + | 1036 | 0.7 | 0.208512 |
Target: 5'- gGCCacgGCcgGCGGCAGCAUguCGcCGCGAAc -3' miRNA: 3'- -UGGa--CG--CGCCGUCGUAguGC-GCGUUU- -5' |
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26445 | 5' | -58.6 | NC_005357.1 | + | 9202 | 0.7 | 0.226079 |
Target: 5'- gGCCUGCuCGGCGGCG-CG-GCGCAc- -3' miRNA: 3'- -UGGACGcGCCGUCGUaGUgCGCGUuu -5' |
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26445 | 5' | -58.6 | NC_005357.1 | + | 35794 | 0.7 | 0.232207 |
Target: 5'- aACCUGUacguguccGCGcGCAGCGcCACGCGCc-- -3' miRNA: 3'- -UGGACG--------CGC-CGUCGUaGUGCGCGuuu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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