miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26447 3' -58 NC_005357.1 + 42144 0.78 0.077657
Target:  5'- cACGugCUCGCCGACCauccgggugUGCUuGGCCUg- -3'
miRNA:   3'- -UGCugGAGCGGUUGG---------ACGA-CCGGAac -5'
26447 3' -58 NC_005357.1 + 38337 0.66 0.438668
Target:  5'- aGCGccgcccACCUgGCCGGCCUGaUGGCUa-- -3'
miRNA:   3'- -UGC------UGGAgCGGUUGGACgACCGGaac -5'
26447 3' -58 NC_005357.1 + 37754 0.78 0.071166
Target:  5'- cAUGACCUUGCCAAUCUggcGCUGGUCUUu -3'
miRNA:   3'- -UGCUGGAGCGGUUGGA---CGACCGGAAc -5'
26447 3' -58 NC_005357.1 + 37609 0.71 0.241216
Target:  5'- gACGACggCGCCGGCCccgaccucuacaaGCUGGCCUa- -3'
miRNA:   3'- -UGCUGgaGCGGUUGGa------------CGACCGGAac -5'
26447 3' -58 NC_005357.1 + 37431 0.72 0.207866
Target:  5'- -gGACUgCGCCGACCUGCUGuucGCCa-- -3'
miRNA:   3'- ugCUGGaGCGGUUGGACGAC---CGGaac -5'
26447 3' -58 NC_005357.1 + 37181 0.66 0.448535
Target:  5'- cCGACC---CCGACCUGCcGGCCg-- -3'
miRNA:   3'- uGCUGGagcGGUUGGACGaCCGGaac -5'
26447 3' -58 NC_005357.1 + 36816 0.67 0.400486
Target:  5'- cAUGAUuagcugCUUGCCGGCCuUGUccuUGGCCUUGu -3'
miRNA:   3'- -UGCUG------GAGCGGUUGG-ACG---ACCGGAAC- -5'
26447 3' -58 NC_005357.1 + 35749 0.67 0.413609
Target:  5'- uCGGCCUuggCGCCccacuuuuccuuggcGACCUGCucgaUGGCCUg- -3'
miRNA:   3'- uGCUGGA---GCGG---------------UUGGACG----ACCGGAac -5'
26447 3' -58 NC_005357.1 + 34993 0.71 0.23744
Target:  5'- -aGGCCgaaGCCGAaCUGCUGGCCg-- -3'
miRNA:   3'- ugCUGGag-CGGUUgGACGACCGGaac -5'
26447 3' -58 NC_005357.1 + 34924 0.74 0.133783
Target:  5'- aACGccACCUCGgCAACCUGCUGGgCg-- -3'
miRNA:   3'- -UGC--UGGAGCgGUUGGACGACCgGaac -5'
26447 3' -58 NC_005357.1 + 34798 0.68 0.373278
Target:  5'- uUGACCUCGgCGGCCgGCUuGCCg-- -3'
miRNA:   3'- uGCUGGAGCgGUUGGaCGAcCGGaac -5'
26447 3' -58 NC_005357.1 + 34465 0.66 0.468629
Target:  5'- gACGAacucauCgUUGCCGACCUGaaauaUGGCCgUGg -3'
miRNA:   3'- -UGCU------GgAGCGGUUGGACg----ACCGGaAC- -5'
26447 3' -58 NC_005357.1 + 34192 0.7 0.284662
Target:  5'- aGCGACUUCGCCGACgaggGCacGGCCg-- -3'
miRNA:   3'- -UGCUGGAGCGGUUGga--CGa-CCGGaac -5'
26447 3' -58 NC_005357.1 + 32988 0.67 0.382207
Target:  5'- cUGGCCgaacaGCCAGCCgUGCaGGCCgUGg -3'
miRNA:   3'- uGCUGGag---CGGUUGG-ACGaCCGGaAC- -5'
26447 3' -58 NC_005357.1 + 28877 0.67 0.391277
Target:  5'- cACGuCCUCGCUgcuGGCguagUUGCUGGCCg-- -3'
miRNA:   3'- -UGCuGGAGCGG---UUG----GACGACCGGaac -5'
26447 3' -58 NC_005357.1 + 28673 0.7 0.250223
Target:  5'- gGCGGCCUCGCCAGCgCgGC-GcGCCa-- -3'
miRNA:   3'- -UGCUGGAGCGGUUG-GaCGaC-CGGaac -5'
26447 3' -58 NC_005357.1 + 28547 0.66 0.468629
Target:  5'- cACGACCUUG-CGGCC-GCcGGCCa-- -3'
miRNA:   3'- -UGCUGGAGCgGUUGGaCGaCCGGaac -5'
26447 3' -58 NC_005357.1 + 28263 0.71 0.243762
Target:  5'- cCGACCUggacaaggCGCCGcACCUGCUGGgCgUGg -3'
miRNA:   3'- uGCUGGA--------GCGGU-UGGACGACCgGaAC- -5'
26447 3' -58 NC_005357.1 + 27661 0.7 0.284662
Target:  5'- gACGACCaCGCCAucuggcgccGCCUGCUG-CCg-- -3'
miRNA:   3'- -UGCUGGaGCGGU---------UGGACGACcGGaac -5'
26447 3' -58 NC_005357.1 + 24748 0.67 0.416456
Target:  5'- cGCGGCCUCGaCCcaugcugucggaauGACCUGCcacgGGUCg-- -3'
miRNA:   3'- -UGCUGGAGC-GG--------------UUGGACGa---CCGGaac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.