miRNA display CGI


Results 1 - 20 of 73 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26447 5' -51.6 NC_005357.1 + 42252 0.69 0.673506
Target:  5'- -gUAGGGCCGGCGGUaGCGAauccccagGCGCu- -3'
miRNA:   3'- gaGUUUCGGCCGUUAaUGCU--------CGCGcc -5'
26447 5' -51.6 NC_005357.1 + 41511 0.67 0.813377
Target:  5'- -cCAAGGCaGGC---UACGAaaGCGCGGu -3'
miRNA:   3'- gaGUUUCGgCCGuuaAUGCU--CGCGCC- -5'
26447 5' -51.6 NC_005357.1 + 40736 0.69 0.662094
Target:  5'- gUCAuGGCCGGCc--UGCGccuGGCGCGu -3'
miRNA:   3'- gAGUuUCGGCCGuuaAUGC---UCGCGCc -5'
26447 5' -51.6 NC_005357.1 + 40243 0.71 0.536997
Target:  5'- -cCuuGGCCGGCAGUU-CGAcGCGCa- -3'
miRNA:   3'- gaGuuUCGGCCGUUAAuGCU-CGCGcc -5'
26447 5' -51.6 NC_005357.1 + 40196 0.67 0.783202
Target:  5'- -cCAAGGcCCGGCGuUUAUaccgcgacaugGAGCGCGa -3'
miRNA:   3'- gaGUUUC-GGCCGUuAAUG-----------CUCGCGCc -5'
26447 5' -51.6 NC_005357.1 + 39775 0.66 0.850669
Target:  5'- -aCAcguuGGCCGGacgcu-UGAGCGCGGc -3'
miRNA:   3'- gaGUu---UCGGCCguuaauGCUCGCGCC- -5'
26447 5' -51.6 NC_005357.1 + 38459 0.79 0.204114
Target:  5'- uUCAAAGCCGGCcgcgGCGAGCGgcaGGc -3'
miRNA:   3'- gAGUUUCGGCCGuuaaUGCUCGCg--CC- -5'
26447 5' -51.6 NC_005357.1 + 38307 0.66 0.859395
Target:  5'- cCUCGAuGGCgGGCAuGUUggccGCGAGCacgucGCGGc -3'
miRNA:   3'- -GAGUU-UCGgCCGU-UAA----UGCUCG-----CGCC- -5'
26447 5' -51.6 NC_005357.1 + 38178 0.66 0.831546
Target:  5'- -aCAGcuuGCCGGCGucauccaGUUGCGGGCuGgGGu -3'
miRNA:   3'- gaGUUu--CGGCCGU-------UAAUGCUCG-CgCC- -5'
26447 5' -51.6 NC_005357.1 + 38036 0.69 0.684875
Target:  5'- gCUCAAGGcCCGGCGcg-ACG-GCGCc- -3'
miRNA:   3'- -GAGUUUC-GGCCGUuaaUGCuCGCGcc -5'
26447 5' -51.6 NC_005357.1 + 37182 0.67 0.783202
Target:  5'- gUCGAGGCCGuaGGccGCGAGCacGUGGc -3'
miRNA:   3'- gAGUUUCGGCcgUUaaUGCUCG--CGCC- -5'
26447 5' -51.6 NC_005357.1 + 36918 0.71 0.54703
Target:  5'- gUCGAGGCCGGCAuacuccacgaAUUugGcccacucGGCGgGGu -3'
miRNA:   3'- gAGUUUCGGCCGU----------UAAugC-------UCGCgCC- -5'
26447 5' -51.6 NC_005357.1 + 36411 0.69 0.69619
Target:  5'- cCUCGAAGUCGu------CGAGCGCGGc -3'
miRNA:   3'- -GAGUUUCGGCcguuaauGCUCGCGCC- -5'
26447 5' -51.6 NC_005357.1 + 35176 0.67 0.793447
Target:  5'- -aCAAGGCCGGCGAcauCGGcccGCGCc- -3'
miRNA:   3'- gaGUUUCGGCCGUUaauGCU---CGCGcc -5'
26447 5' -51.6 NC_005357.1 + 34697 0.66 0.859395
Target:  5'- -aCAgcAAGCCGGCcgc--CGAGCGUGc -3'
miRNA:   3'- gaGU--UUCGGCCGuuaauGCUCGCGCc -5'
26447 5' -51.6 NC_005357.1 + 34043 0.69 0.684875
Target:  5'- -aCGuGGgCGGCGAUUcucgaagauuCGAGCGCGGc -3'
miRNA:   3'- gaGUuUCgGCCGUUAAu---------GCUCGCGCC- -5'
26447 5' -51.6 NC_005357.1 + 33947 0.67 0.813377
Target:  5'- gCUCGAcAGCCGcGcCGAUgGCGGGCaGCGa -3'
miRNA:   3'- -GAGUU-UCGGC-C-GUUAaUGCUCG-CGCc -5'
26447 5' -51.6 NC_005357.1 + 32591 0.78 0.243239
Target:  5'- aUCcuGGCCGGCAucaccagccugcACGGGCGCGGa -3'
miRNA:   3'- gAGuuUCGGCCGUuaa---------UGCUCGCGCC- -5'
26447 5' -51.6 NC_005357.1 + 32179 0.68 0.707437
Target:  5'- gUCGAGGUCGGCAGcgGCcAGgGCGu -3'
miRNA:   3'- gAGUUUCGGCCGUUaaUGcUCgCGCc -5'
26447 5' -51.6 NC_005357.1 + 32133 0.67 0.800511
Target:  5'- -gCGGGGCCGaugagcauggcgucGCAuaguugUGCGAGCGCGc -3'
miRNA:   3'- gaGUUUCGGC--------------CGUua----AUGCUCGCGCc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.