miRNA display CGI


Results 21 - 40 of 73 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26447 5' -51.6 NC_005357.1 + 31098 0.82 0.129459
Target:  5'- cCUCGgugcAGGCCGGCGAguggUGCGAGauaGCGGg -3'
miRNA:   3'- -GAGU----UUCGGCCGUUa---AUGCUCg--CGCC- -5'
26447 5' -51.6 NC_005357.1 + 30412 0.7 0.59339
Target:  5'- gCUUuc-GCuCGGCAuggcgAUGAGCGCGGg -3'
miRNA:   3'- -GAGuuuCG-GCCGUuaa--UGCUCGCGCC- -5'
26447 5' -51.6 NC_005357.1 + 30192 0.67 0.772787
Target:  5'- ---cAGGCCGGCG---GCGuguucuGGCGCGGc -3'
miRNA:   3'- gaguUUCGGCCGUuaaUGC------UCGCGCC- -5'
26447 5' -51.6 NC_005357.1 + 29256 0.67 0.803509
Target:  5'- aCUCAuaAGGCCGGCcggUGuCGGG-GUGGa -3'
miRNA:   3'- -GAGU--UUCGGCCGuuaAU-GCUCgCGCC- -5'
26447 5' -51.6 NC_005357.1 + 28664 0.71 0.548149
Target:  5'- aUCGGuGCCGGCGGccuCGccAGCGCGGc -3'
miRNA:   3'- gAGUUuCGGCCGUUaauGC--UCGCGCC- -5'
26447 5' -51.6 NC_005357.1 + 28211 0.67 0.813377
Target:  5'- gUCcAGGUCGGCcacgccgACGAccacGCGCGGg -3'
miRNA:   3'- gAGuUUCGGCCGuuaa---UGCU----CGCGCC- -5'
26447 5' -51.6 NC_005357.1 + 27941 0.68 0.751497
Target:  5'- ---cGAGCaCGcCAAgaugGCGAGCGCGGa -3'
miRNA:   3'- gaguUUCG-GCcGUUaa--UGCUCGCGCC- -5'
26447 5' -51.6 NC_005357.1 + 27824 0.66 0.859395
Target:  5'- gUCcGAGCCGGaCGAgggcaGCGAguuGCGCGa -3'
miRNA:   3'- gAGuUUCGGCC-GUUaa---UGCU---CGCGCc -5'
26447 5' -51.6 NC_005357.1 + 27501 0.71 0.548149
Target:  5'- -cCAGGGCCuGCGGccgcCGGGCGCGGu -3'
miRNA:   3'- gaGUUUCGGcCGUUaau-GCUCGCGCC- -5'
26447 5' -51.6 NC_005357.1 + 26041 0.75 0.355545
Target:  5'- aUCAAAGCCcGCGcg-GCGGGCGCGc -3'
miRNA:   3'- gAGUUUCGGcCGUuaaUGCUCGCGCc -5'
26447 5' -51.6 NC_005357.1 + 25568 0.67 0.803509
Target:  5'- cCUCAucGCgGGCcugacccugaccAAgcACGAGCGCGc -3'
miRNA:   3'- -GAGUuuCGgCCG------------UUaaUGCUCGCGCc -5'
26447 5' -51.6 NC_005357.1 + 25387 0.66 0.850669
Target:  5'- -aCAAucCCGGCG---ACGAGCGCcGGu -3'
miRNA:   3'- gaGUUucGGCCGUuaaUGCUCGCG-CC- -5'
26447 5' -51.6 NC_005357.1 + 24800 0.69 0.650652
Target:  5'- gUCGAGGCCGcGCA------GGCGCGGu -3'
miRNA:   3'- gAGUUUCGGC-CGUuaaugcUCGCGCC- -5'
26447 5' -51.6 NC_005357.1 + 24309 0.66 0.850669
Target:  5'- --uGAGGUCGGCGAgcagccGCGGGUcagGCGGc -3'
miRNA:   3'- gagUUUCGGCCGUUaa----UGCUCG---CGCC- -5'
26447 5' -51.6 NC_005357.1 + 23983 0.71 0.582003
Target:  5'- aUCAcgccuauGCCGGCAuggaagccGCGGGCGUGGc -3'
miRNA:   3'- gAGUuu-----CGGCCGUuaa-----UGCUCGCGCC- -5'
26447 5' -51.6 NC_005357.1 + 23959 0.66 0.841694
Target:  5'- -gCGAGGUCGGCAuUUGcCGAuucauGCGCGu -3'
miRNA:   3'- gaGUUUCGGCCGUuAAU-GCU-----CGCGCc -5'
26447 5' -51.6 NC_005357.1 + 23566 0.83 0.105473
Target:  5'- -aCAucGCCGGCAggUGCGGGCGgGGg -3'
miRNA:   3'- gaGUuuCGGCCGUuaAUGCUCGCgCC- -5'
26447 5' -51.6 NC_005357.1 + 23500 0.72 0.482572
Target:  5'- uCUCGAccuG-CGGCAGUUccGCGAGCGCGc -3'
miRNA:   3'- -GAGUUu--CgGCCGUUAA--UGCUCGCGCc -5'
26447 5' -51.6 NC_005357.1 + 22322 0.68 0.762215
Target:  5'- gCUgAcGGCCGGCGAaUACGccauCGCGGc -3'
miRNA:   3'- -GAgUuUCGGCCGUUaAUGCuc--GCGCC- -5'
26447 5' -51.6 NC_005357.1 + 21808 0.68 0.751497
Target:  5'- -gCGGAcaCCGGCAGUUGC-AGCgGCGGg -3'
miRNA:   3'- gaGUUUc-GGCCGUUAAUGcUCG-CGCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.