Results 21 - 40 of 73 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26447 | 5' | -51.6 | NC_005357.1 | + | 23500 | 0.72 | 0.482572 |
Target: 5'- uCUCGAccuG-CGGCAGUUccGCGAGCGCGc -3' miRNA: 3'- -GAGUUu--CgGCCGUUAA--UGCUCGCGCc -5' |
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26447 | 5' | -51.6 | NC_005357.1 | + | 14189 | 0.71 | 0.548149 |
Target: 5'- -gCGAAGCCGGUguccuugucauaGGUcagGCGcAGCGCGGc -3' miRNA: 3'- gaGUUUCGGCCG------------UUAa--UGC-UCGCGCC- -5' |
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26447 | 5' | -51.6 | NC_005357.1 | + | 28664 | 0.71 | 0.548149 |
Target: 5'- aUCGGuGCCGGCGGccuCGccAGCGCGGc -3' miRNA: 3'- gAGUUuCGGCCGUUaauGC--UCGCGCC- -5' |
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26447 | 5' | -51.6 | NC_005357.1 | + | 1706 | 0.71 | 0.582003 |
Target: 5'- uUCGccguGGGCCGGCGugccgGCGAGgGCGu -3' miRNA: 3'- gAGU----UUCGGCCGUuaa--UGCUCgCGCc -5' |
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26447 | 5' | -51.6 | NC_005357.1 | + | 34043 | 0.69 | 0.684875 |
Target: 5'- -aCGuGGgCGGCGAUUcucgaagauuCGAGCGCGGc -3' miRNA: 3'- gaGUuUCgGCCGUUAAu---------GCUCGCGCC- -5' |
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26447 | 5' | -51.6 | NC_005357.1 | + | 38036 | 0.69 | 0.684875 |
Target: 5'- gCUCAAGGcCCGGCGcg-ACG-GCGCc- -3' miRNA: 3'- -GAGUUUC-GGCCGUuaaUGCuCGCGcc -5' |
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26447 | 5' | -51.6 | NC_005357.1 | + | 9846 | 0.7 | 0.639192 |
Target: 5'- cCUCGGuuUCGGCGucgAUGAGCGUGGc -3' miRNA: 3'- -GAGUUucGGCCGUuaaUGCUCGCGCC- -5' |
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26447 | 5' | -51.6 | NC_005357.1 | + | 10937 | 0.7 | 0.627724 |
Target: 5'- -gCAGGGCCucgGGCAGUUGCGcGGCGacagcCGGg -3' miRNA: 3'- gaGUUUCGG---CCGUUAAUGC-UCGC-----GCC- -5' |
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26447 | 5' | -51.6 | NC_005357.1 | + | 30412 | 0.7 | 0.59339 |
Target: 5'- gCUUuc-GCuCGGCAuggcgAUGAGCGCGGg -3' miRNA: 3'- -GAGuuuCG-GCCGUuaa--UGCUCGCGCC- -5' |
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26447 | 5' | -51.6 | NC_005357.1 | + | 23983 | 0.71 | 0.582003 |
Target: 5'- aUCAcgccuauGCCGGCAuggaagccGCGGGCGUGGc -3' miRNA: 3'- gAGUuu-----CGGCCGUuaa-----UGCUCGCGCC- -5' |
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26447 | 5' | -51.6 | NC_005357.1 | + | 16496 | 0.71 | 0.570661 |
Target: 5'- uUCAAcgccGCCGGCGAUUACcc-CGCGGc -3' miRNA: 3'- gAGUUu---CGGCCGUUAAUGcucGCGCC- -5' |
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26447 | 5' | -51.6 | NC_005357.1 | + | 27501 | 0.71 | 0.548149 |
Target: 5'- -cCAGGGCCuGCGGccgcCGGGCGCGGu -3' miRNA: 3'- gaGUUUCGGcCGUUaau-GCUCGCGCC- -5' |
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26447 | 5' | -51.6 | NC_005357.1 | + | 36918 | 0.71 | 0.54703 |
Target: 5'- gUCGAGGCCGGCAuacuccacgaAUUugGcccacucGGCGgGGu -3' miRNA: 3'- gAGUUUCGGCCGU----------UAAugC-------UCGCgCC- -5' |
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26447 | 5' | -51.6 | NC_005357.1 | + | 40243 | 0.71 | 0.536997 |
Target: 5'- -cCuuGGCCGGCAGUU-CGAcGCGCa- -3' miRNA: 3'- gaGuuUCGGCCGUUAAuGCU-CGCGcc -5' |
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26447 | 5' | -51.6 | NC_005357.1 | + | 13251 | 0.72 | 0.514938 |
Target: 5'- -aCAAcGCCGGcCAAggGCGcccAGCGCGGc -3' miRNA: 3'- gaGUUuCGGCC-GUUaaUGC---UCGCGCC- -5' |
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26447 | 5' | -51.6 | NC_005357.1 | + | 18648 | 0.75 | 0.373505 |
Target: 5'- uCUCGGacGGCCaGGCcGUcaccGCGAGCGCGGc -3' miRNA: 3'- -GAGUU--UCGG-CCGuUAa---UGCUCGCGCC- -5' |
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26447 | 5' | -51.6 | NC_005357.1 | + | 20834 | 0.75 | 0.346796 |
Target: 5'- ----cAGCCGcGCGAUgaguCGAGCGCGGc -3' miRNA: 3'- gaguuUCGGC-CGUUAau--GCUCGCGCC- -5' |
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26447 | 5' | -51.6 | NC_005357.1 | + | 32591 | 0.78 | 0.243239 |
Target: 5'- aUCcuGGCCGGCAucaccagccugcACGGGCGCGGa -3' miRNA: 3'- gAGuuUCGGCCGUuaa---------UGCUCGCGCC- -5' |
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26447 | 5' | -51.6 | NC_005357.1 | + | 38459 | 0.79 | 0.204114 |
Target: 5'- uUCAAAGCCGGCcgcgGCGAGCGgcaGGc -3' miRNA: 3'- gAGUUUCGGCCGuuaaUGCUCGCg--CC- -5' |
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26447 | 5' | -51.6 | NC_005357.1 | + | 6624 | 0.66 | 0.859395 |
Target: 5'- cCUCAAGGaugcgcugacgcCUGGCGAUU-CGGGCGaCGa -3' miRNA: 3'- -GAGUUUC------------GGCCGUUAAuGCUCGC-GCc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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