miRNA display CGI


Results 41 - 60 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26447 5' -51.6 NC_005357.1 + 15179 0.68 0.762215
Target:  5'- gUC-GGGCCugguaGGCAgcuAUUACGGcGCGCGGu -3'
miRNA:   3'- gAGuUUCGG-----CCGU---UAAUGCU-CGCGCC- -5'
26447 5' -51.6 NC_005357.1 + 30192 0.67 0.772787
Target:  5'- ---cAGGCCGGCG---GCGuguucuGGCGCGGc -3'
miRNA:   3'- gaguUUCGGCCGUuaaUGC------UCGCGCC- -5'
26447 5' -51.6 NC_005357.1 + 882 0.67 0.772787
Target:  5'- -cCGAcGuUCGGCAAggGCuGGGCGCGGc -3'
miRNA:   3'- gaGUUuC-GGCCGUUaaUG-CUCGCGCC- -5'
26447 5' -51.6 NC_005357.1 + 37182 0.67 0.783202
Target:  5'- gUCGAGGCCGuaGGccGCGAGCacGUGGc -3'
miRNA:   3'- gAGUUUCGGCcgUUaaUGCUCG--CGCC- -5'
26447 5' -51.6 NC_005357.1 + 40736 0.69 0.662094
Target:  5'- gUCAuGGCCGGCc--UGCGccuGGCGCGu -3'
miRNA:   3'- gAGUuUCGGCCGuuaAUGC---UCGCGCc -5'
26447 5' -51.6 NC_005357.1 + 24800 0.69 0.650652
Target:  5'- gUCGAGGCCGcGCA------GGCGCGGu -3'
miRNA:   3'- gAGUUUCGGC-CGUuaaugcUCGCGCC- -5'
26447 5' -51.6 NC_005357.1 + 38459 0.79 0.204114
Target:  5'- uUCAAAGCCGGCcgcgGCGAGCGgcaGGc -3'
miRNA:   3'- gAGUUUCGGCCGuuaaUGCUCGCg--CC- -5'
26447 5' -51.6 NC_005357.1 + 32591 0.78 0.243239
Target:  5'- aUCcuGGCCGGCAucaccagccugcACGGGCGCGGa -3'
miRNA:   3'- gAGuuUCGGCCGUuaa---------UGCUCGCGCC- -5'
26447 5' -51.6 NC_005357.1 + 20834 0.75 0.346796
Target:  5'- ----cAGCCGcGCGAUgaguCGAGCGCGGc -3'
miRNA:   3'- gaguuUCGGC-CGUUAau--GCUCGCGCC- -5'
26447 5' -51.6 NC_005357.1 + 18648 0.75 0.373505
Target:  5'- uCUCGGacGGCCaGGCcGUcaccGCGAGCGCGGc -3'
miRNA:   3'- -GAGUU--UCGG-CCGuUAa---UGCUCGCGCC- -5'
26447 5' -51.6 NC_005357.1 + 13251 0.72 0.514938
Target:  5'- -aCAAcGCCGGcCAAggGCGcccAGCGCGGc -3'
miRNA:   3'- gaGUUuCGGCC-GUUaaUGC---UCGCGCC- -5'
26447 5' -51.6 NC_005357.1 + 40243 0.71 0.536997
Target:  5'- -cCuuGGCCGGCAGUU-CGAcGCGCa- -3'
miRNA:   3'- gaGuuUCGGCCGUUAAuGCU-CGCGcc -5'
26447 5' -51.6 NC_005357.1 + 36918 0.71 0.54703
Target:  5'- gUCGAGGCCGGCAuacuccacgaAUUugGcccacucGGCGgGGu -3'
miRNA:   3'- gAGUUUCGGCCGU----------UAAugC-------UCGCgCC- -5'
26447 5' -51.6 NC_005357.1 + 27501 0.71 0.548149
Target:  5'- -cCAGGGCCuGCGGccgcCGGGCGCGGu -3'
miRNA:   3'- gaGUUUCGGcCGUUaau-GCUCGCGCC- -5'
26447 5' -51.6 NC_005357.1 + 16496 0.71 0.570661
Target:  5'- uUCAAcgccGCCGGCGAUUACcc-CGCGGc -3'
miRNA:   3'- gAGUUu---CGGCCGUUAAUGcucGCGCC- -5'
26447 5' -51.6 NC_005357.1 + 23983 0.71 0.582003
Target:  5'- aUCAcgccuauGCCGGCAuggaagccGCGGGCGUGGc -3'
miRNA:   3'- gAGUuu-----CGGCCGUuaa-----UGCUCGCGCC- -5'
26447 5' -51.6 NC_005357.1 + 8065 0.71 0.582003
Target:  5'- uUCGu-GCguuCGGCAA--ACGAGCGCGGc -3'
miRNA:   3'- gAGUuuCG---GCCGUUaaUGCUCGCGCC- -5'
26447 5' -51.6 NC_005357.1 + 19244 0.7 0.616261
Target:  5'- aUCGAcGCCGGCGGc-ACGGGCaGCGa -3'
miRNA:   3'- gAGUUuCGGCCGUUaaUGCUCG-CGCc -5'
26447 5' -51.6 NC_005357.1 + 5272 0.7 0.627724
Target:  5'- cCUCGAcgugggcacgguAGCCGGCAAUaucgACGAcGUGCaGGc -3'
miRNA:   3'- -GAGUU------------UCGGCCGUUAa---UGCU-CGCG-CC- -5'
26447 5' -51.6 NC_005357.1 + 7082 0.69 0.647216
Target:  5'- aUCAAcGCCaaguccucguucauGGCGAau-CGGGCGCGGa -3'
miRNA:   3'- gAGUUuCGG--------------CCGUUaauGCUCGCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.