miRNA display CGI


Results 41 - 60 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26447 5' -51.6 NC_005357.1 + 24800 0.69 0.650652
Target:  5'- gUCGAGGCCGcGCA------GGCGCGGu -3'
miRNA:   3'- gAGUUUCGGC-CGUuaaugcUCGCGCC- -5'
26447 5' -51.6 NC_005357.1 + 25387 0.66 0.850669
Target:  5'- -aCAAucCCGGCG---ACGAGCGCcGGu -3'
miRNA:   3'- gaGUUucGGCCGUuaaUGCUCGCG-CC- -5'
26447 5' -51.6 NC_005357.1 + 25568 0.67 0.803509
Target:  5'- cCUCAucGCgGGCcugacccugaccAAgcACGAGCGCGc -3'
miRNA:   3'- -GAGUuuCGgCCG------------UUaaUGCUCGCGCc -5'
26447 5' -51.6 NC_005357.1 + 26041 0.75 0.355545
Target:  5'- aUCAAAGCCcGCGcg-GCGGGCGCGc -3'
miRNA:   3'- gAGUUUCGGcCGUuaaUGCUCGCGCc -5'
26447 5' -51.6 NC_005357.1 + 27501 0.71 0.548149
Target:  5'- -cCAGGGCCuGCGGccgcCGGGCGCGGu -3'
miRNA:   3'- gaGUUUCGGcCGUUaau-GCUCGCGCC- -5'
26447 5' -51.6 NC_005357.1 + 27824 0.66 0.859395
Target:  5'- gUCcGAGCCGGaCGAgggcaGCGAguuGCGCGa -3'
miRNA:   3'- gAGuUUCGGCC-GUUaa---UGCU---CGCGCc -5'
26447 5' -51.6 NC_005357.1 + 27941 0.68 0.751497
Target:  5'- ---cGAGCaCGcCAAgaugGCGAGCGCGGa -3'
miRNA:   3'- gaguUUCG-GCcGUUaa--UGCUCGCGCC- -5'
26447 5' -51.6 NC_005357.1 + 28211 0.67 0.813377
Target:  5'- gUCcAGGUCGGCcacgccgACGAccacGCGCGGg -3'
miRNA:   3'- gAGuUUCGGCCGuuaa---UGCU----CGCGCC- -5'
26447 5' -51.6 NC_005357.1 + 28664 0.71 0.548149
Target:  5'- aUCGGuGCCGGCGGccuCGccAGCGCGGc -3'
miRNA:   3'- gAGUUuCGGCCGUUaauGC--UCGCGCC- -5'
26447 5' -51.6 NC_005357.1 + 29256 0.67 0.803509
Target:  5'- aCUCAuaAGGCCGGCcggUGuCGGG-GUGGa -3'
miRNA:   3'- -GAGU--UUCGGCCGuuaAU-GCUCgCGCC- -5'
26447 5' -51.6 NC_005357.1 + 30192 0.67 0.772787
Target:  5'- ---cAGGCCGGCG---GCGuguucuGGCGCGGc -3'
miRNA:   3'- gaguUUCGGCCGUuaaUGC------UCGCGCC- -5'
26447 5' -51.6 NC_005357.1 + 30412 0.7 0.59339
Target:  5'- gCUUuc-GCuCGGCAuggcgAUGAGCGCGGg -3'
miRNA:   3'- -GAGuuuCG-GCCGUuaa--UGCUCGCGCC- -5'
26447 5' -51.6 NC_005357.1 + 31098 0.82 0.129459
Target:  5'- cCUCGgugcAGGCCGGCGAguggUGCGAGauaGCGGg -3'
miRNA:   3'- -GAGU----UUCGGCCGUUa---AUGCUCg--CGCC- -5'
26447 5' -51.6 NC_005357.1 + 32133 0.67 0.800511
Target:  5'- -gCGGGGCCGaugagcauggcgucGCAuaguugUGCGAGCGCGc -3'
miRNA:   3'- gaGUUUCGGC--------------CGUua----AUGCUCGCGCc -5'
26447 5' -51.6 NC_005357.1 + 32179 0.68 0.707437
Target:  5'- gUCGAGGUCGGCAGcgGCcAGgGCGu -3'
miRNA:   3'- gAGUUUCGGCCGUUaaUGcUCgCGCc -5'
26447 5' -51.6 NC_005357.1 + 32591 0.78 0.243239
Target:  5'- aUCcuGGCCGGCAucaccagccugcACGGGCGCGGa -3'
miRNA:   3'- gAGuuUCGGCCGUuaa---------UGCUCGCGCC- -5'
26447 5' -51.6 NC_005357.1 + 33947 0.67 0.813377
Target:  5'- gCUCGAcAGCCGcGcCGAUgGCGGGCaGCGa -3'
miRNA:   3'- -GAGUU-UCGGC-C-GUUAaUGCUCG-CGCc -5'
26447 5' -51.6 NC_005357.1 + 34043 0.69 0.684875
Target:  5'- -aCGuGGgCGGCGAUUcucgaagauuCGAGCGCGGc -3'
miRNA:   3'- gaGUuUCgGCCGUUAAu---------GCUCGCGCC- -5'
26447 5' -51.6 NC_005357.1 + 34697 0.66 0.859395
Target:  5'- -aCAgcAAGCCGGCcgc--CGAGCGUGc -3'
miRNA:   3'- gaGU--UUCGGCCGuuaauGCUCGCGCc -5'
26447 5' -51.6 NC_005357.1 + 35176 0.67 0.793447
Target:  5'- -aCAAGGCCGGCGAcauCGGcccGCGCc- -3'
miRNA:   3'- gaGUUUCGGCCGUUaauGCU---CGCGcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.