Results 41 - 60 of 73 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26447 | 5' | -51.6 | NC_005357.1 | + | 21808 | 0.68 | 0.751497 |
Target: 5'- -gCGGAcaCCGGCAGUUGC-AGCgGCGGg -3' miRNA: 3'- gaGUUUc-GGCCGUUAAUGcUCG-CGCC- -5' |
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26447 | 5' | -51.6 | NC_005357.1 | + | 15179 | 0.68 | 0.762215 |
Target: 5'- gUC-GGGCCugguaGGCAgcuAUUACGGcGCGCGGu -3' miRNA: 3'- gAGuUUCGG-----CCGU---UAAUGCU-CGCGCC- -5' |
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26447 | 5' | -51.6 | NC_005357.1 | + | 8124 | 0.68 | 0.762215 |
Target: 5'- -gCGcGGCCGGCGuugGUUGUGGGCguGCGGg -3' miRNA: 3'- gaGUuUCGGCCGU---UAAUGCUCG--CGCC- -5' |
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26447 | 5' | -51.6 | NC_005357.1 | + | 22322 | 0.68 | 0.762215 |
Target: 5'- gCUgAcGGCCGGCGAaUACGccauCGCGGc -3' miRNA: 3'- -GAgUuUCGGCCGUUaAUGCuc--GCGCC- -5' |
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26447 | 5' | -51.6 | NC_005357.1 | + | 30192 | 0.67 | 0.772787 |
Target: 5'- ---cAGGCCGGCG---GCGuguucuGGCGCGGc -3' miRNA: 3'- gaguUUCGGCCGUuaaUGC------UCGCGCC- -5' |
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26447 | 5' | -51.6 | NC_005357.1 | + | 882 | 0.67 | 0.772787 |
Target: 5'- -cCGAcGuUCGGCAAggGCuGGGCGCGGc -3' miRNA: 3'- gaGUUuC-GGCCGUUaaUG-CUCGCGCC- -5' |
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26447 | 5' | -51.6 | NC_005357.1 | + | 12993 | 0.67 | 0.783202 |
Target: 5'- --aGAAGCUGacuaGC-GUUAUGGGCGCGGc -3' miRNA: 3'- gagUUUCGGC----CGuUAAUGCUCGCGCC- -5' |
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26447 | 5' | -51.6 | NC_005357.1 | + | 37182 | 0.67 | 0.783202 |
Target: 5'- gUCGAGGCCGuaGGccGCGAGCacGUGGc -3' miRNA: 3'- gAGUUUCGGCcgUUaaUGCUCG--CGCC- -5' |
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26447 | 5' | -51.6 | NC_005357.1 | + | 40196 | 0.67 | 0.783202 |
Target: 5'- -cCAAGGcCCGGCGuUUAUaccgcgacaugGAGCGCGa -3' miRNA: 3'- gaGUUUC-GGCCGUuAAUG-----------CUCGCGCc -5' |
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26447 | 5' | -51.6 | NC_005357.1 | + | 20309 | 0.67 | 0.793447 |
Target: 5'- gCUCGGcGGCCGGU---UGCGA-UGCGGg -3' miRNA: 3'- -GAGUU-UCGGCCGuuaAUGCUcGCGCC- -5' |
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26447 | 5' | -51.6 | NC_005357.1 | + | 4857 | 0.67 | 0.793447 |
Target: 5'- -gCAGcgccAGCCGGCGugcuggGCGcAGUGUGGg -3' miRNA: 3'- gaGUU----UCGGCCGUuaa---UGC-UCGCGCC- -5' |
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26447 | 5' | -51.6 | NC_005357.1 | + | 35176 | 0.67 | 0.793447 |
Target: 5'- -aCAAGGCCGGCGAcauCGGcccGCGCc- -3' miRNA: 3'- gaGUUUCGGCCGUUaauGCU---CGCGcc -5' |
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26447 | 5' | -51.6 | NC_005357.1 | + | 32133 | 0.67 | 0.800511 |
Target: 5'- -gCGGGGCCGaugagcauggcgucGCAuaguugUGCGAGCGCGc -3' miRNA: 3'- gaGUUUCGGC--------------CGUua----AUGCUCGCGCc -5' |
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26447 | 5' | -51.6 | NC_005357.1 | + | 29256 | 0.67 | 0.803509 |
Target: 5'- aCUCAuaAGGCCGGCcggUGuCGGG-GUGGa -3' miRNA: 3'- -GAGU--UUCGGCCGuuaAU-GCUCgCGCC- -5' |
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26447 | 5' | -51.6 | NC_005357.1 | + | 25568 | 0.67 | 0.803509 |
Target: 5'- cCUCAucGCgGGCcugacccugaccAAgcACGAGCGCGc -3' miRNA: 3'- -GAGUuuCGgCCG------------UUaaUGCUCGCGCc -5' |
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26447 | 5' | -51.6 | NC_005357.1 | + | 9726 | 0.67 | 0.812399 |
Target: 5'- cCUCGAAGCCgcgGGCGAacUGCucgugguGGGCGCGc -3' miRNA: 3'- -GAGUUUCGG---CCGUUa-AUG-------CUCGCGCc -5' |
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26447 | 5' | -51.6 | NC_005357.1 | + | 28211 | 0.67 | 0.813377 |
Target: 5'- gUCcAGGUCGGCcacgccgACGAccacGCGCGGg -3' miRNA: 3'- gAGuUUCGGCCGuuaa---UGCU----CGCGCC- -5' |
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26447 | 5' | -51.6 | NC_005357.1 | + | 33947 | 0.67 | 0.813377 |
Target: 5'- gCUCGAcAGCCGcGcCGAUgGCGGGCaGCGa -3' miRNA: 3'- -GAGUU-UCGGC-C-GUUAaUGCUCG-CGCc -5' |
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26447 | 5' | -51.6 | NC_005357.1 | + | 41511 | 0.67 | 0.813377 |
Target: 5'- -cCAAGGCaGGC---UACGAaaGCGCGGu -3' miRNA: 3'- gaGUUUCGgCCGuuaAUGCU--CGCGCC- -5' |
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26447 | 5' | -51.6 | NC_005357.1 | + | 4032 | 0.66 | 0.823037 |
Target: 5'- gUCAu-GCCGcGCGGgu-CGAGCGCa- -3' miRNA: 3'- gAGUuuCGGC-CGUUaauGCUCGCGcc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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