Results 21 - 40 of 73 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26447 | 5' | -51.6 | NC_005357.1 | + | 15179 | 0.68 | 0.762215 |
Target: 5'- gUC-GGGCCugguaGGCAgcuAUUACGGcGCGCGGu -3' miRNA: 3'- gAGuUUCGG-----CCGU---UAAUGCU-CGCGCC- -5' |
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26447 | 5' | -51.6 | NC_005357.1 | + | 16496 | 0.71 | 0.570661 |
Target: 5'- uUCAAcgccGCCGGCGAUUACcc-CGCGGc -3' miRNA: 3'- gAGUUu---CGGCCGUUAAUGcucGCGCC- -5' |
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26447 | 5' | -51.6 | NC_005357.1 | + | 16647 | 0.66 | 0.823037 |
Target: 5'- -gCAGGuGCCGGCcg--ACGAGggaGCGGa -3' miRNA: 3'- gaGUUU-CGGCCGuuaaUGCUCg--CGCC- -5' |
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26447 | 5' | -51.6 | NC_005357.1 | + | 17288 | 0.81 | 0.162981 |
Target: 5'- -aCGAAGCCGGCGcc-GCGGGCGCGc -3' miRNA: 3'- gaGUUUCGGCCGUuaaUGCUCGCGCc -5' |
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26447 | 5' | -51.6 | NC_005357.1 | + | 17672 | 0.68 | 0.751497 |
Target: 5'- aUCGAGGCCGGUAu---CGAcaacGCGCa- -3' miRNA: 3'- gAGUUUCGGCCGUuaauGCU----CGCGcc -5' |
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26447 | 5' | -51.6 | NC_005357.1 | + | 18219 | 0.66 | 0.841694 |
Target: 5'- -aCAGGGCuauuuCGGCAAgcugcGCGAGC-CGGg -3' miRNA: 3'- gaGUUUCG-----GCCGUUaa---UGCUCGcGCC- -5' |
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26447 | 5' | -51.6 | NC_005357.1 | + | 18648 | 0.75 | 0.373505 |
Target: 5'- uCUCGGacGGCCaGGCcGUcaccGCGAGCGCGGc -3' miRNA: 3'- -GAGUU--UCGG-CCGuUAa---UGCUCGCGCC- -5' |
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26447 | 5' | -51.6 | NC_005357.1 | + | 19244 | 0.7 | 0.616261 |
Target: 5'- aUCGAcGCCGGCGGc-ACGGGCaGCGa -3' miRNA: 3'- gAGUUuCGGCCGUUaaUGCUCG-CGCc -5' |
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26447 | 5' | -51.6 | NC_005357.1 | + | 19818 | 0.68 | 0.705194 |
Target: 5'- cCUCGuGGCCGGCAacaacggcaaccAgcccaagcaggGCGAuGCGCGGc -3' miRNA: 3'- -GAGUuUCGGCCGU------------Uaa---------UGCU-CGCGCC- -5' |
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26447 | 5' | -51.6 | NC_005357.1 | + | 20280 | 0.68 | 0.751497 |
Target: 5'- -cCAAcAGCCGGCc---GCGGGCGCu- -3' miRNA: 3'- gaGUU-UCGGCCGuuaaUGCUCGCGcc -5' |
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26447 | 5' | -51.6 | NC_005357.1 | + | 20309 | 0.67 | 0.793447 |
Target: 5'- gCUCGGcGGCCGGU---UGCGA-UGCGGg -3' miRNA: 3'- -GAGUU-UCGGCCGuuaAUGCUcGCGCC- -5' |
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26447 | 5' | -51.6 | NC_005357.1 | + | 20834 | 0.75 | 0.346796 |
Target: 5'- ----cAGCCGcGCGAUgaguCGAGCGCGGc -3' miRNA: 3'- gaguuUCGGC-CGUUAau--GCUCGCGCC- -5' |
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26447 | 5' | -51.6 | NC_005357.1 | + | 21231 | 0.68 | 0.729679 |
Target: 5'- -gCAgcAGGCCGcGCuGUUGaaccaGGGCGCGGa -3' miRNA: 3'- gaGU--UUCGGC-CGuUAAUg----CUCGCGCC- -5' |
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26447 | 5' | -51.6 | NC_005357.1 | + | 21808 | 0.68 | 0.751497 |
Target: 5'- -gCGGAcaCCGGCAGUUGC-AGCgGCGGg -3' miRNA: 3'- gaGUUUc-GGCCGUUAAUGcUCG-CGCC- -5' |
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26447 | 5' | -51.6 | NC_005357.1 | + | 22322 | 0.68 | 0.762215 |
Target: 5'- gCUgAcGGCCGGCGAaUACGccauCGCGGc -3' miRNA: 3'- -GAgUuUCGGCCGUUaAUGCuc--GCGCC- -5' |
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26447 | 5' | -51.6 | NC_005357.1 | + | 23500 | 0.72 | 0.482572 |
Target: 5'- uCUCGAccuG-CGGCAGUUccGCGAGCGCGc -3' miRNA: 3'- -GAGUUu--CgGCCGUUAA--UGCUCGCGCc -5' |
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26447 | 5' | -51.6 | NC_005357.1 | + | 23566 | 0.83 | 0.105473 |
Target: 5'- -aCAucGCCGGCAggUGCGGGCGgGGg -3' miRNA: 3'- gaGUuuCGGCCGUuaAUGCUCGCgCC- -5' |
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26447 | 5' | -51.6 | NC_005357.1 | + | 23959 | 0.66 | 0.841694 |
Target: 5'- -gCGAGGUCGGCAuUUGcCGAuucauGCGCGu -3' miRNA: 3'- gaGUUUCGGCCGUuAAU-GCU-----CGCGCc -5' |
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26447 | 5' | -51.6 | NC_005357.1 | + | 23983 | 0.71 | 0.582003 |
Target: 5'- aUCAcgccuauGCCGGCAuggaagccGCGGGCGUGGc -3' miRNA: 3'- gAGUuu-----CGGCCGUuaa-----UGCUCGCGCC- -5' |
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26447 | 5' | -51.6 | NC_005357.1 | + | 24309 | 0.66 | 0.850669 |
Target: 5'- --uGAGGUCGGCGAgcagccGCGGGUcagGCGGc -3' miRNA: 3'- gagUUUCGGCCGUUaa----UGCUCG---CGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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