Results 21 - 40 of 73 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26447 | 5' | -51.6 | NC_005357.1 | + | 17672 | 0.68 | 0.751497 |
Target: 5'- aUCGAGGCCGGUAu---CGAcaacGCGCa- -3' miRNA: 3'- gAGUUUCGGCCGUuaauGCU----CGCGcc -5' |
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26447 | 5' | -51.6 | NC_005357.1 | + | 21231 | 0.68 | 0.729679 |
Target: 5'- -gCAgcAGGCCGcGCuGUUGaaccaGGGCGCGGa -3' miRNA: 3'- gaGU--UUCGGC-CGuUAAUg----CUCGCGCC- -5' |
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26447 | 5' | -51.6 | NC_005357.1 | + | 36411 | 0.69 | 0.69619 |
Target: 5'- cCUCGAAGUCGu------CGAGCGCGGc -3' miRNA: 3'- -GAGUUUCGGCcguuaauGCUCGCGCC- -5' |
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26447 | 5' | -51.6 | NC_005357.1 | + | 24800 | 0.69 | 0.650652 |
Target: 5'- gUCGAGGCCGcGCA------GGCGCGGu -3' miRNA: 3'- gAGUUUCGGC-CGUuaaugcUCGCGCC- -5' |
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26447 | 5' | -51.6 | NC_005357.1 | + | 33947 | 0.67 | 0.813377 |
Target: 5'- gCUCGAcAGCCGcGcCGAUgGCGGGCaGCGa -3' miRNA: 3'- -GAGUU-UCGGC-C-GUUAaUGCUCG-CGCc -5' |
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26447 | 5' | -51.6 | NC_005357.1 | + | 30192 | 0.67 | 0.772787 |
Target: 5'- ---cAGGCCGGCG---GCGuguucuGGCGCGGc -3' miRNA: 3'- gaguUUCGGCCGUuaaUGC------UCGCGCC- -5' |
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26447 | 5' | -51.6 | NC_005357.1 | + | 32179 | 0.68 | 0.707437 |
Target: 5'- gUCGAGGUCGGCAGcgGCcAGgGCGu -3' miRNA: 3'- gAGUUUCGGCCGUUaaUGcUCgCGCc -5' |
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26447 | 5' | -51.6 | NC_005357.1 | + | 7082 | 0.69 | 0.647216 |
Target: 5'- aUCAAcGCCaaguccucguucauGGCGAau-CGGGCGCGGa -3' miRNA: 3'- gAGUUuCGG--------------CCGUUaauGCUCGCGCC- -5' |
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26447 | 5' | -51.6 | NC_005357.1 | + | 15179 | 0.68 | 0.762215 |
Target: 5'- gUC-GGGCCugguaGGCAgcuAUUACGGcGCGCGGu -3' miRNA: 3'- gAGuUUCGG-----CCGU---UAAUGCU-CGCGCC- -5' |
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26447 | 5' | -51.6 | NC_005357.1 | + | 5272 | 0.7 | 0.627724 |
Target: 5'- cCUCGAcgugggcacgguAGCCGGCAAUaucgACGAcGUGCaGGc -3' miRNA: 3'- -GAGUU------------UCGGCCGUUAa---UGCU-CGCG-CC- -5' |
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26447 | 5' | -51.6 | NC_005357.1 | + | 7704 | 0.68 | 0.718604 |
Target: 5'- --aGGAGCCGGCGuggguCGAGcCGCGc -3' miRNA: 3'- gagUUUCGGCCGUuaau-GCUC-GCGCc -5' |
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26447 | 5' | -51.6 | NC_005357.1 | + | 27941 | 0.68 | 0.751497 |
Target: 5'- ---cGAGCaCGcCAAgaugGCGAGCGCGGa -3' miRNA: 3'- gaguUUCG-GCcGUUaa--UGCUCGCGCC- -5' |
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26447 | 5' | -51.6 | NC_005357.1 | + | 19818 | 0.68 | 0.705194 |
Target: 5'- cCUCGuGGCCGGCAacaacggcaaccAgcccaagcaggGCGAuGCGCGGc -3' miRNA: 3'- -GAGUuUCGGCCGU------------Uaa---------UGCU-CGCGCC- -5' |
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26447 | 5' | -51.6 | NC_005357.1 | + | 13600 | 0.69 | 0.69619 |
Target: 5'- gUCAGgcGGCCGaCAGUU-CG-GCGCGGa -3' miRNA: 3'- gAGUU--UCGGCcGUUAAuGCuCGCGCC- -5' |
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26447 | 5' | -51.6 | NC_005357.1 | + | 42252 | 0.69 | 0.673506 |
Target: 5'- -gUAGGGCCGGCGGUaGCGAauccccagGCGCu- -3' miRNA: 3'- gaGUUUCGGCCGUUAaUGCU--------CGCGcc -5' |
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26447 | 5' | -51.6 | NC_005357.1 | + | 40736 | 0.69 | 0.662094 |
Target: 5'- gUCAuGGCCGGCc--UGCGccuGGCGCGu -3' miRNA: 3'- gAGUuUCGGCCGuuaAUGC---UCGCGCc -5' |
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26447 | 5' | -51.6 | NC_005357.1 | + | 6624 | 0.66 | 0.859395 |
Target: 5'- cCUCAAGGaugcgcugacgcCUGGCGAUU-CGGGCGaCGa -3' miRNA: 3'- -GAGUUUC------------GGCCGUUAAuGCUCGC-GCc -5' |
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26447 | 5' | -51.6 | NC_005357.1 | + | 38178 | 0.66 | 0.831546 |
Target: 5'- -aCAGcuuGCCGGCGucauccaGUUGCGGGCuGgGGu -3' miRNA: 3'- gaGUUu--CGGCCGU-------UAAUGCUCG-CgCC- -5' |
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26447 | 5' | -51.6 | NC_005357.1 | + | 4857 | 0.67 | 0.793447 |
Target: 5'- -gCAGcgccAGCCGGCGugcuggGCGcAGUGUGGg -3' miRNA: 3'- gaGUU----UCGGCCGUuaa---UGC-UCGCGCC- -5' |
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26447 | 5' | -51.6 | NC_005357.1 | + | 882 | 0.67 | 0.772787 |
Target: 5'- -cCGAcGuUCGGCAAggGCuGGGCGCGGc -3' miRNA: 3'- gaGUUuC-GGCCGUUaaUG-CUCGCGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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