Results 1 - 20 of 33 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26448 | 3' | -51 | NC_005357.1 | + | 39709 | 0.67 | 0.814558 |
Target: 5'- cGACGUUGCGcaggugcgcccACUUCGUCGauucgucggGCCAGGUg -3' miRNA: 3'- -CUGUAGCGU-----------UGGAGUAGC---------UGGUCUAg -5' |
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26448 | 3' | -51 | NC_005357.1 | + | 38541 | 0.71 | 0.545941 |
Target: 5'- cGACAUCGagaaauACCUCGUCGAgCGcGUCa -3' miRNA: 3'- -CUGUAGCgu----UGGAGUAGCUgGUcUAG- -5' |
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26448 | 3' | -51 | NC_005357.1 | + | 38231 | 0.66 | 0.869533 |
Target: 5'- cGACGugcUCGCGGCCaacaugcccgcCAUCGAggcggccggcuaCCAGAUCg -3' miRNA: 3'- -CUGU---AGCGUUGGa----------GUAGCU------------GGUCUAG- -5' |
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26448 | 3' | -51 | NC_005357.1 | + | 36622 | 0.67 | 0.814558 |
Target: 5'- cGCAgagCGCGACguuCUCGUCGAUcaacgcccaccgCAGAUCg -3' miRNA: 3'- cUGUa--GCGUUG---GAGUAGCUG------------GUCUAG- -5' |
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26448 | 3' | -51 | NC_005357.1 | + | 35040 | 0.69 | 0.67292 |
Target: 5'- cGGCcuUCGCGcgaaugGCCUUGcaccaggacUCGACCAGAUCg -3' miRNA: 3'- -CUGu-AGCGU------UGGAGU---------AGCUGGUCUAG- -5' |
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26448 | 3' | -51 | NC_005357.1 | + | 34834 | 0.69 | 0.69591 |
Target: 5'- cGACAUUGCu-UCUCAcCGgggGCCAGGUCg -3' miRNA: 3'- -CUGUAGCGuuGGAGUaGC---UGGUCUAG- -5' |
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26448 | 3' | -51 | NC_005357.1 | + | 32298 | 0.7 | 0.626526 |
Target: 5'- cGCGUugCGCGACCUCAUCGccgccaucaagGCCGGcGUCc -3' miRNA: 3'- cUGUA--GCGUUGGAGUAGC-----------UGGUC-UAG- -5' |
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26448 | 3' | -51 | NC_005357.1 | + | 30184 | 0.68 | 0.739849 |
Target: 5'- cGGCGUguucuggCGCGGCCUCAUCGcCUGGGa- -3' miRNA: 3'- -CUGUA-------GCGUUGGAGUAGCuGGUCUag -5' |
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26448 | 3' | -51 | NC_005357.1 | + | 29794 | 0.66 | 0.861003 |
Target: 5'- cGGCAuacgcugucUCGCGcucgauGCCgaugaaUCGUCGACCAGAa- -3' miRNA: 3'- -CUGU---------AGCGU------UGG------AGUAGCUGGUCUag -5' |
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26448 | 3' | -51 | NC_005357.1 | + | 29010 | 0.71 | 0.556162 |
Target: 5'- cGACGUagGCGACCaggCGccgcgcuUCGGCCAGGUCg -3' miRNA: 3'- -CUGUAg-CGUUGGa--GU-------AGCUGGUCUAG- -5' |
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26448 | 3' | -51 | NC_005357.1 | + | 28327 | 0.69 | 0.671766 |
Target: 5'- cGGCGUCGgAcucgauggccuugGCCUCGUCGGgCAGcgCg -3' miRNA: 3'- -CUGUAGCgU-------------UGGAGUAGCUgGUCuaG- -5' |
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26448 | 3' | -51 | NC_005357.1 | + | 27359 | 0.69 | 0.718624 |
Target: 5'- cGACcUCGCAGCaCUCGuccagccauUCGGCCAGcaaAUCc -3' miRNA: 3'- -CUGuAGCGUUG-GAGU---------AGCUGGUC---UAG- -5' |
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26448 | 3' | -51 | NC_005357.1 | + | 19688 | 0.68 | 0.773501 |
Target: 5'- cGAUGUCGCGGCCcgCAU-GACCccggacggcaAGAUCg -3' miRNA: 3'- -CUGUAGCGUUGGa-GUAgCUGG----------UCUAG- -5' |
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26448 | 3' | -51 | NC_005357.1 | + | 18975 | 0.75 | 0.351592 |
Target: 5'- cGCGggCGcCGACCUCAUCGACCuGAUg -3' miRNA: 3'- cUGUa-GC-GUUGGAGUAGCUGGuCUAg -5' |
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26448 | 3' | -51 | NC_005357.1 | + | 18887 | 0.7 | 0.614911 |
Target: 5'- cGCAaaauUCGCAGCUUCcugCGccGCCAGAUCa -3' miRNA: 3'- cUGU----AGCGUUGGAGua-GC--UGGUCUAG- -5' |
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26448 | 3' | -51 | NC_005357.1 | + | 18626 | 0.69 | 0.69591 |
Target: 5'- cGCGagCGCGGCCUCcacCGACguGAUCg -3' miRNA: 3'- cUGUa-GCGUUGGAGua-GCUGguCUAG- -5' |
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26448 | 3' | -51 | NC_005357.1 | + | 17853 | 0.71 | 0.580212 |
Target: 5'- -cCAcCGUGGCCUCGUCGcCCAGGUa -3' miRNA: 3'- cuGUaGCGUUGGAGUAGCuGGUCUAg -5' |
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26448 | 3' | -51 | NC_005357.1 | + | 16602 | 0.69 | 0.684443 |
Target: 5'- aGCAagGCGGCCUguacggcuaUAUCGGCCAGAc- -3' miRNA: 3'- cUGUagCGUUGGA---------GUAGCUGGUCUag -5' |
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26448 | 3' | -51 | NC_005357.1 | + | 14819 | 0.66 | 0.843155 |
Target: 5'- cGGCggCGCuGCCU--UCGcCCAGGUCg -3' miRNA: 3'- -CUGuaGCGuUGGAguAGCuGGUCUAG- -5' |
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26448 | 3' | -51 | NC_005357.1 | + | 14120 | 0.66 | 0.861003 |
Target: 5'- -uUAUCGCcguaCUCGUCGGCCAGc-- -3' miRNA: 3'- cuGUAGCGuug-GAGUAGCUGGUCuag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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