Results 21 - 33 of 33 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26449 | 5' | -65 | NC_005357.1 | + | 24136 | 0.7 | 0.113443 |
Target: 5'- gUCCaG-CCGGCUGCGCgccUGGCCCaGCGc -3' miRNA: 3'- aAGG-CgGGCCGACGCGa--GCUGGG-CGC- -5' |
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26449 | 5' | -65 | NC_005357.1 | + | 15712 | 0.69 | 0.119742 |
Target: 5'- gUCCGCCUgggcaucgaacuGGCgcgaggccaUGCGCUCGACauaCCGCa -3' miRNA: 3'- aAGGCGGG------------CCG---------ACGCGAGCUG---GGCGc -5' |
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26449 | 5' | -65 | NC_005357.1 | + | 39689 | 0.68 | 0.148318 |
Target: 5'- --aCGCCCGaGCaGCGC-CGGgCCGCGc -3' miRNA: 3'- aagGCGGGC-CGaCGCGaGCUgGGCGC- -5' |
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26449 | 5' | -65 | NC_005357.1 | + | 35160 | 0.68 | 0.162251 |
Target: 5'- -aCCGCCgagaagcugcacaaGGCcgGCGacaUCGGCCCGCGc -3' miRNA: 3'- aaGGCGGg-------------CCGa-CGCg--AGCUGGGCGC- -5' |
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26449 | 5' | -65 | NC_005357.1 | + | 20608 | 0.68 | 0.164829 |
Target: 5'- cUUCGCCaGGCgGCGUcgcaggucggugUCGGCCUGCGc -3' miRNA: 3'- aAGGCGGgCCGaCGCG------------AGCUGGGCGC- -5' |
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26449 | 5' | -65 | NC_005357.1 | + | 10749 | 0.68 | 0.164829 |
Target: 5'- -cUCGCCaagGGC-GCGCUCGacuucgGCCCGCa -3' miRNA: 3'- aaGGCGGg--CCGaCGCGAGC------UGGGCGc -5' |
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26449 | 5' | -65 | NC_005357.1 | + | 14885 | 0.67 | 0.169208 |
Target: 5'- -gUUGCCCGGCuuucagggucUGCGCggCGAUCUGCu -3' miRNA: 3'- aaGGCGGGCCG----------ACGCGa-GCUGGGCGc -5' |
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26449 | 5' | -65 | NC_005357.1 | + | 32923 | 0.67 | 0.169208 |
Target: 5'- -cCUGCaCGGCUGCuGUUCGGCCaggGCGa -3' miRNA: 3'- aaGGCGgGCCGACG-CGAGCUGGg--CGC- -5' |
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26449 | 5' | -65 | NC_005357.1 | + | 12723 | 0.67 | 0.169208 |
Target: 5'- -gUCGCCCGGCccguugGUGCUggGugCCGCGc -3' miRNA: 3'- aaGGCGGGCCGa-----CGCGAg-CugGGCGC- -5' |
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26449 | 5' | -65 | NC_005357.1 | + | 32785 | 0.66 | 0.202861 |
Target: 5'- gUCCGCCCucGGCaccuCGCUgGugCUGCGc -3' miRNA: 3'- aAGGCGGG--CCGac--GCGAgCugGGCGC- -5' |
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26449 | 5' | -65 | NC_005357.1 | + | 18120 | 0.66 | 0.208118 |
Target: 5'- -gCCGUCCGGUacgucgaacuUGuCGCcCGGCUCGCGc -3' miRNA: 3'- aaGGCGGGCCG----------AC-GCGaGCUGGGCGC- -5' |
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26449 | 5' | -65 | NC_005357.1 | + | 9282 | 0.66 | 0.221216 |
Target: 5'- -cCCGguacaCCGGCUGCGCauugacuuccucggCGACCUgGCGg -3' miRNA: 3'- aaGGCg----GGCCGACGCGa-------------GCUGGG-CGC- -5' |
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26449 | 5' | -65 | NC_005357.1 | + | 38056 | 0.73 | 0.065491 |
Target: 5'- --gCGCCUGGCUGCGCaUCcGCCUGCc -3' miRNA: 3'- aagGCGGGCCGACGCG-AGcUGGGCGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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