Results 1 - 20 of 37 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2645 | 5' | -59.6 | NC_001491.2 | + | 43971 | 0.66 | 0.741049 |
Target: 5'- cGCCGGGgCgGGuGGC-GACGGaCAGCUg -3' miRNA: 3'- -CGGUCUgGgUC-CCGuCUGUC-GUCGAg -5' |
|||||||
2645 | 5' | -59.6 | NC_001491.2 | + | 48835 | 0.66 | 0.691828 |
Target: 5'- gGCCcaGGGCCCuGGGUGGGCcuccaaGGCcguggacaAGCUCa -3' miRNA: 3'- -CGG--UCUGGGuCCCGUCUG------UCG--------UCGAG- -5' |
|||||||
2645 | 5' | -59.6 | NC_001491.2 | + | 1273 | 0.66 | 0.691828 |
Target: 5'- gGCCuGGGCcacgCCGGGGCucGGGCcgGGguGCUCa -3' miRNA: 3'- -CGG-UCUG----GGUCCCG--UCUG--UCguCGAG- -5' |
|||||||
2645 | 5' | -59.6 | NC_001491.2 | + | 34554 | 0.66 | 0.701805 |
Target: 5'- aGCCgaGGGCCCcgaccgucGGGGCGGAUucaGGCGcGUUCc -3' miRNA: 3'- -CGG--UCUGGG--------UCCCGUCUG---UCGU-CGAG- -5' |
|||||||
2645 | 5' | -59.6 | NC_001491.2 | + | 68709 | 0.66 | 0.701805 |
Target: 5'- cGCUGGgauGCCCAcGGGUuaacGGugGcGCGGCUCg -3' miRNA: 3'- -CGGUC---UGGGU-CCCG----UCugU-CGUCGAG- -5' |
|||||||
2645 | 5' | -59.6 | NC_001491.2 | + | 23066 | 0.66 | 0.715675 |
Target: 5'- aGCCAGGCCCAGGuccGCGGGuuccacaacgggaaaUugGGCGGCc- -3' miRNA: 3'- -CGGUCUGGGUCC---CGUCU---------------G--UCGUCGag -5' |
|||||||
2645 | 5' | -59.6 | NC_001491.2 | + | 64567 | 0.66 | 0.721578 |
Target: 5'- aGCCAG-UCgAGGGgGGugAGCGGgUUg -3' miRNA: 3'- -CGGUCuGGgUCCCgUCugUCGUCgAG- -5' |
|||||||
2645 | 5' | -59.6 | NC_001491.2 | + | 11491 | 0.66 | 0.721578 |
Target: 5'- uGCCuGGCCCcucuGGGguGGgGGUcaggggAGCUCu -3' miRNA: 3'- -CGGuCUGGGu---CCCguCUgUCG------UCGAG- -5' |
|||||||
2645 | 5' | -59.6 | NC_001491.2 | + | 136299 | 0.66 | 0.731356 |
Target: 5'- cGCCGGggcuggcgGCCUuGGGCGG-UGGCAGCg- -3' miRNA: 3'- -CGGUC--------UGGGuCCCGUCuGUCGUCGag -5' |
|||||||
2645 | 5' | -59.6 | NC_001491.2 | + | 24615 | 0.67 | 0.641379 |
Target: 5'- uCCcGcCCCGGGGCGGccgcugccGCGGCGGCg- -3' miRNA: 3'- cGGuCuGGGUCCCGUC--------UGUCGUCGag -5' |
|||||||
2645 | 5' | -59.6 | NC_001491.2 | + | 125197 | 0.67 | 0.641379 |
Target: 5'- cGCCGGaACCCauaaGGGGCAu-CAGCGGUc- -3' miRNA: 3'- -CGGUC-UGGG----UCCCGUcuGUCGUCGag -5' |
|||||||
2645 | 5' | -59.6 | NC_001491.2 | + | 64038 | 0.67 | 0.661637 |
Target: 5'- gGCgAGugCCAcGGCuucUAGCAGCUCg -3' miRNA: 3'- -CGgUCugGGUcCCGucuGUCGUCGAG- -5' |
|||||||
2645 | 5' | -59.6 | NC_001491.2 | + | 93944 | 0.67 | 0.661637 |
Target: 5'- cGCCGGACCCAGuacGUAGccaugaAGCAGCc- -3' miRNA: 3'- -CGGUCUGGGUCc--CGUCug----UCGUCGag -5' |
|||||||
2645 | 5' | -59.6 | NC_001491.2 | + | 31747 | 0.67 | 0.681802 |
Target: 5'- aGCCAGAacaugUUCGGGGUGGACGacGCuccGCUCu -3' miRNA: 3'- -CGGUCU-----GGGUCCCGUCUGU--CGu--CGAG- -5' |
|||||||
2645 | 5' | -59.6 | NC_001491.2 | + | 2083 | 0.68 | 0.610958 |
Target: 5'- cGCCuggcGGAgCCCAGGcGCAGGCAgagguacucgacGCAGC-Cg -3' miRNA: 3'- -CGG----UCU-GGGUCC-CGUCUGU------------CGUCGaG- -5' |
|||||||
2645 | 5' | -59.6 | NC_001491.2 | + | 5322 | 0.68 | 0.610958 |
Target: 5'- aGCCGGGCugggugCCGGGGacgccggcuGGGCGGCAGC-Cg -3' miRNA: 3'- -CGGUCUG------GGUCCCg--------UCUGUCGUCGaG- -5' |
|||||||
2645 | 5' | -59.6 | NC_001491.2 | + | 2241 | 0.68 | 0.600838 |
Target: 5'- -gCGGuucCCCAGGGCcGcCAGCAGCg- -3' miRNA: 3'- cgGUCu--GGGUCCCGuCuGUCGUCGag -5' |
|||||||
2645 | 5' | -59.6 | NC_001491.2 | + | 4822 | 0.68 | 0.599827 |
Target: 5'- aGCCGGagcggguGCgCCGGGGgaagcggcgcCGGAgCGGCAGCUCu -3' miRNA: 3'- -CGGUC-------UG-GGUCCC----------GUCU-GUCGUCGAG- -5' |
|||||||
2645 | 5' | -59.6 | NC_001491.2 | + | 28598 | 0.69 | 0.511561 |
Target: 5'- -aCGGGCgCAGGGCccgcggGGAUAGCGGCa- -3' miRNA: 3'- cgGUCUGgGUCCCG------UCUGUCGUCGag -5' |
|||||||
2645 | 5' | -59.6 | NC_001491.2 | + | 2548 | 0.69 | 0.511561 |
Target: 5'- cGCCAGGCCuCGGGGa--ACAGCugguugucgaugAGCUCc -3' miRNA: 3'- -CGGUCUGG-GUCCCgucUGUCG------------UCGAG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home