miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2645 5' -59.6 NC_001491.2 + 136299 0.66 0.731356
Target:  5'- cGCCGGggcuggcgGCCUuGGGCGG-UGGCAGCg- -3'
miRNA:   3'- -CGGUC--------UGGGuCCCGUCuGUCGUCGag -5'
2645 5' -59.6 NC_001491.2 + 125197 0.67 0.641379
Target:  5'- cGCCGGaACCCauaaGGGGCAu-CAGCGGUc- -3'
miRNA:   3'- -CGGUC-UGGG----UCCCGUcuGUCGUCGag -5'
2645 5' -59.6 NC_001491.2 + 115394 1.12 0.000706
Target:  5'- cGCCAGACCCAGGGCAGACAGCAGCUCg -3'
miRNA:   3'- -CGGUCUGGGUCCCGUCUGUCGUCGAG- -5'
2645 5' -59.6 NC_001491.2 + 113589 0.7 0.464338
Target:  5'- cGCUAGugauucGCgCAGGGCAGugAGCcgcGCUCc -3'
miRNA:   3'- -CGGUC------UGgGUCCCGUCugUCGu--CGAG- -5'
2645 5' -59.6 NC_001491.2 + 110429 0.71 0.410841
Target:  5'- cGCCGGGCCCacucccgcuAGGGCGGAUgaGGUGGUg- -3'
miRNA:   3'- -CGGUCUGGG---------UCCCGUCUG--UCGUCGag -5'
2645 5' -59.6 NC_001491.2 + 109973 0.71 0.428252
Target:  5'- cGCCAGcucccGCUCGGcGGCAGugGCGGCGGCa- -3'
miRNA:   3'- -CGGUC-----UGGGUC-CCGUC--UGUCGUCGag -5'
2645 5' -59.6 NC_001491.2 + 98718 0.71 0.436228
Target:  5'- uGCUAugauuuuGuACCCAGGGCAGGCGGcCAGUa- -3'
miRNA:   3'- -CGGU-------C-UGGGUCCCGUCUGUC-GUCGag -5'
2645 5' -59.6 NC_001491.2 + 93944 0.67 0.661637
Target:  5'- cGCCGGACCCAGuacGUAGccaugaAGCAGCc- -3'
miRNA:   3'- -CGGUCUGGGUCc--CGUCug----UCGUCGag -5'
2645 5' -59.6 NC_001491.2 + 72021 0.69 0.539848
Target:  5'- uGCCcccgauaAGGCCCAGGGCcucugccgcGAUAGCAaaggccgcGCUCa -3'
miRNA:   3'- -CGG-------UCUGGGUCCCGu--------CUGUCGU--------CGAG- -5'
2645 5' -59.6 NC_001491.2 + 68709 0.66 0.701805
Target:  5'- cGCUGGgauGCCCAcGGGUuaacGGugGcGCGGCUCg -3'
miRNA:   3'- -CGGUC---UGGGU-CCCG----UCugU-CGUCGAG- -5'
2645 5' -59.6 NC_001491.2 + 64567 0.66 0.721578
Target:  5'- aGCCAG-UCgAGGGgGGugAGCGGgUUg -3'
miRNA:   3'- -CGGUCuGGgUCCCgUCugUCGUCgAG- -5'
2645 5' -59.6 NC_001491.2 + 64038 0.67 0.661637
Target:  5'- gGCgAGugCCAcGGCuucUAGCAGCUCg -3'
miRNA:   3'- -CGgUCugGGUcCCGucuGUCGUCGAG- -5'
2645 5' -59.6 NC_001491.2 + 48835 0.66 0.691828
Target:  5'- gGCCcaGGGCCCuGGGUGGGCcuccaaGGCcguggacaAGCUCa -3'
miRNA:   3'- -CGG--UCUGGGuCCCGUCUG------UCG--------UCGAG- -5'
2645 5' -59.6 NC_001491.2 + 44163 0.72 0.377371
Target:  5'- -aCAGACCCAGcGCGG-CGGCAGC-Cg -3'
miRNA:   3'- cgGUCUGGGUCcCGUCuGUCGUCGaG- -5'
2645 5' -59.6 NC_001491.2 + 43971 0.66 0.741049
Target:  5'- cGCCGGGgCgGGuGGC-GACGGaCAGCUg -3'
miRNA:   3'- -CGGUCUgGgUC-CCGuCUGUC-GUCGAg -5'
2645 5' -59.6 NC_001491.2 + 34554 0.66 0.701805
Target:  5'- aGCCgaGGGCCCcgaccgucGGGGCGGAUucaGGCGcGUUCc -3'
miRNA:   3'- -CGG--UCUGGG--------UCCCGUCUG---UCGU-CGAG- -5'
2645 5' -59.6 NC_001491.2 + 32752 0.78 0.173632
Target:  5'- cCCAGGCuaCCGGGGCGGcgGCAGCAGCa- -3'
miRNA:   3'- cGGUCUG--GGUCCCGUC--UGUCGUCGag -5'
2645 5' -59.6 NC_001491.2 + 31747 0.67 0.681802
Target:  5'- aGCCAGAacaugUUCGGGGUGGACGacGCuccGCUCu -3'
miRNA:   3'- -CGGUCU-----GGGUCCCGUCUGU--CGu--CGAG- -5'
2645 5' -59.6 NC_001491.2 + 31271 0.71 0.420363
Target:  5'- aGCCGGcgaaggcuauaccuuCCCcGGGCAGACccgGGCGGCUUc -3'
miRNA:   3'- -CGGUCu--------------GGGuCCCGUCUG---UCGUCGAG- -5'
2645 5' -59.6 NC_001491.2 + 28598 0.69 0.511561
Target:  5'- -aCGGGCgCAGGGCccgcggGGAUAGCGGCa- -3'
miRNA:   3'- cgGUCUGgGUCCCG------UCUGUCGUCGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.