miRNA display CGI


Results 41 - 60 of 108 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26450 3' -56.4 NC_005357.1 + 19539 0.68 0.501356
Target:  5'- gUugGCCUCGAUgACGGUcauGuCGuCGAGGa -3'
miRNA:   3'- gAugUGGAGCUGgUGCCG---C-GC-GUUCC- -5'
26450 3' -56.4 NC_005357.1 + 9974 0.68 0.501356
Target:  5'- --cCACCUCGcAgUAgGGgGCGUAGGGg -3'
miRNA:   3'- gauGUGGAGC-UgGUgCCgCGCGUUCC- -5'
26450 3' -56.4 NC_005357.1 + 40210 0.68 0.490996
Target:  5'- uUAUACCgCGA-CAUGGaGCGCGAGGc -3'
miRNA:   3'- gAUGUGGaGCUgGUGCCgCGCGUUCC- -5'
26450 3' -56.4 NC_005357.1 + 2778 0.68 0.490996
Target:  5'- -gACACCUCGACguugCGCaGGUGCGCc--- -3'
miRNA:   3'- gaUGUGGAGCUG----GUG-CCGCGCGuucc -5'
26450 3' -56.4 NC_005357.1 + 8688 0.68 0.490996
Target:  5'- -cGCACCUCGGCguUGGUGUacugGCcGGGu -3'
miRNA:   3'- gaUGUGGAGCUGguGCCGCG----CGuUCC- -5'
26450 3' -56.4 NC_005357.1 + 7353 0.68 0.480738
Target:  5'- -cGCgGCCUCGACCuCGGCGUcguucguccaGCGGcGGg -3'
miRNA:   3'- gaUG-UGGAGCUGGuGCCGCG----------CGUU-CC- -5'
26450 3' -56.4 NC_005357.1 + 9326 0.68 0.480738
Target:  5'- -cGCACgUCGG-CGCGGCGgGCGGcGGc -3'
miRNA:   3'- gaUGUGgAGCUgGUGCCGCgCGUU-CC- -5'
26450 3' -56.4 NC_005357.1 + 6381 0.68 0.480738
Target:  5'- uUACACCaggUCGGCCgccGCGGCGCcCucGGu -3'
miRNA:   3'- gAUGUGG---AGCUGG---UGCCGCGcGuuCC- -5'
26450 3' -56.4 NC_005357.1 + 28673 0.68 0.480738
Target:  5'- -gGCgGCCUCG-CCagcGCGGCGCGCcacgucguucacAAGGu -3'
miRNA:   3'- gaUG-UGGAGCuGG---UGCCGCGCG------------UUCC- -5'
26450 3' -56.4 NC_005357.1 + 24626 0.68 0.480738
Target:  5'- -gGCACgUCGAaccaCAUGGCGUGCcggcGGGc -3'
miRNA:   3'- gaUGUGgAGCUg---GUGCCGCGCGu---UCC- -5'
26450 3' -56.4 NC_005357.1 + 10743 0.68 0.480738
Target:  5'- uUGCugCUCG-CCAagGGCGCGCucGa -3'
miRNA:   3'- gAUGugGAGCuGGUg-CCGCGCGuuCc -5'
26450 3' -56.4 NC_005357.1 + 28740 0.68 0.470584
Target:  5'- -aGCGCCUUGGCaucguccagCGCGGUGCGCuucucGGc -3'
miRNA:   3'- gaUGUGGAGCUG---------GUGCCGCGCGuu---CC- -5'
26450 3' -56.4 NC_005357.1 + 29117 0.68 0.470584
Target:  5'- uUGCugC-CGGUCAC-GCGCGCGAGGc -3'
miRNA:   3'- gAUGugGaGCUGGUGcCGCGCGUUCC- -5'
26450 3' -56.4 NC_005357.1 + 13344 0.68 0.460541
Target:  5'- -cGgGCCU-GACCuCGGCGCcCGAGGa -3'
miRNA:   3'- gaUgUGGAgCUGGuGCCGCGcGUUCC- -5'
26450 3' -56.4 NC_005357.1 + 24016 0.68 0.460541
Target:  5'- -gGCGCgUCGGCCAauucagcgaaGGCGaCGCGAcGGa -3'
miRNA:   3'- gaUGUGgAGCUGGUg---------CCGC-GCGUU-CC- -5'
26450 3' -56.4 NC_005357.1 + 28554 0.68 0.460541
Target:  5'- uUGCgGCCgcCGGCCaucGCGGCGCGCAc-- -3'
miRNA:   3'- gAUG-UGGa-GCUGG---UGCCGCGCGUucc -5'
26450 3' -56.4 NC_005357.1 + 6584 0.68 0.460541
Target:  5'- --cCGCCUCGGCCAgGGgGCuGCGGu- -3'
miRNA:   3'- gauGUGGAGCUGGUgCCgCG-CGUUcc -5'
26450 3' -56.4 NC_005357.1 + 3667 0.68 0.450612
Target:  5'- -aGCACCUCGuCCACGccuuCGUGCGAa- -3'
miRNA:   3'- gaUGUGGAGCuGGUGCc---GCGCGUUcc -5'
26450 3' -56.4 NC_005357.1 + 8861 0.68 0.450612
Target:  5'- gUugGCCUCGgucGCCACGaaGCGgGCGcGGg -3'
miRNA:   3'- gAugUGGAGC---UGGUGC--CGCgCGUuCC- -5'
26450 3' -56.4 NC_005357.1 + 29759 0.68 0.450612
Target:  5'- ---gGCCUCGGCUgcugccagGCGcGUGCGCGAGa -3'
miRNA:   3'- gaugUGGAGCUGG--------UGC-CGCGCGUUCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.