miRNA display CGI


Results 1 - 20 of 182 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26451 5' -54.3 NC_005357.1 + 39493 0.76 0.189728
Target:  5'- gCCGcGCGACGCgguGugGGCCGGCAUgGGa -3'
miRNA:   3'- -GGC-CGUUGCG---UugCCGGUCGUAgUUc -5'
26451 5' -54.3 NC_005357.1 + 25542 0.71 0.391667
Target:  5'- gCCGGCAGCGCccccguagccGAUGauGUCGGCGUCGGa -3'
miRNA:   3'- -GGCCGUUGCG----------UUGC--CGGUCGUAGUUc -5'
26451 5' -54.3 NC_005357.1 + 10696 0.71 0.391667
Target:  5'- aCGGCAGCGCGcACGGCCucGGCc----- -3'
miRNA:   3'- gGCCGUUGCGU-UGCCGG--UCGuaguuc -5'
26451 5' -54.3 NC_005357.1 + 19032 0.71 0.391667
Target:  5'- gCGGUAGCccugGUAGCGGCCgccggcGGCGUCGAu -3'
miRNA:   3'- gGCCGUUG----CGUUGCCGG------UCGUAGUUc -5'
26451 5' -54.3 NC_005357.1 + 12014 0.71 0.391667
Target:  5'- gCCaGCAGCGCGGCcguGGCCGGCGa---- -3'
miRNA:   3'- -GGcCGUUGCGUUG---CCGGUCGUaguuc -5'
26451 5' -54.3 NC_005357.1 + 14761 0.71 0.382456
Target:  5'- uUGGC-GCGCAGCGuGUCGGUGUCGAu -3'
miRNA:   3'- gGCCGuUGCGUUGC-CGGUCGUAGUUc -5'
26451 5' -54.3 NC_005357.1 + 24553 0.72 0.36447
Target:  5'- gUCGcGCAGCGCGGCgauggcgaGGCCGGCcacgGUCGGGc -3'
miRNA:   3'- -GGC-CGUUGCGUUG--------CCGGUCG----UAGUUC- -5'
26451 5' -54.3 NC_005357.1 + 618 0.72 0.36447
Target:  5'- gCCaGCAGCGCcguggacacGGCGuCCGGCGUCGAGu -3'
miRNA:   3'- -GGcCGUUGCG---------UUGCcGGUCGUAGUUC- -5'
26451 5' -54.3 NC_005357.1 + 14889 0.72 0.355699
Target:  5'- cCCGGCuuucagggucuGCGCGGCgaucugcugcuGGCCGGCcUCAAGu -3'
miRNA:   3'- -GGCCGu----------UGCGUUG-----------CCGGUCGuAGUUC- -5'
26451 5' -54.3 NC_005357.1 + 24825 0.72 0.355699
Target:  5'- uCUGGCuGCGCAAUGGCUcgGGCAacgauugCAGGg -3'
miRNA:   3'- -GGCCGuUGCGUUGCCGG--UCGUa------GUUC- -5'
26451 5' -54.3 NC_005357.1 + 9318 0.72 0.346224
Target:  5'- cCUGGCGGCGCAcgucggcGCGGCgGGCggCGGc -3'
miRNA:   3'- -GGCCGUUGCGU-------UGCCGgUCGuaGUUc -5'
26451 5' -54.3 NC_005357.1 + 20906 0.72 0.338607
Target:  5'- gCCGGCAACGUgucGAUGcCCAGCcuuUCGAGu -3'
miRNA:   3'- -GGCCGUUGCG---UUGCcGGUCGu--AGUUC- -5'
26451 5' -54.3 NC_005357.1 + 25619 0.73 0.314103
Target:  5'- aCGGCGGCGCggUcGCCAGCAgcgCGu- -3'
miRNA:   3'- gGCCGUUGCGuuGcCGGUCGUa--GUuc -5'
26451 5' -54.3 NC_005357.1 + 41541 0.73 0.306239
Target:  5'- uCUGGaaCAACGCGGCGGCCcuCGUCGAu -3'
miRNA:   3'- -GGCC--GUUGCGUUGCCGGucGUAGUUc -5'
26451 5' -54.3 NC_005357.1 + 22536 0.73 0.298527
Target:  5'- aCGcGCAGCGCGcGCGuGCCGGUguuGUCGAGg -3'
miRNA:   3'- gGC-CGUUGCGU-UGC-CGGUCG---UAGUUC- -5'
26451 5' -54.3 NC_005357.1 + 20212 0.73 0.290965
Target:  5'- uUGGCAGCGCccGCGGCCGGCuGUUg-- -3'
miRNA:   3'- gGCCGUUGCGu-UGCCGGUCG-UAGuuc -5'
26451 5' -54.3 NC_005357.1 + 21276 0.73 0.290965
Target:  5'- gUCGGCGuaagugucgGCcCAGCGGUCGGCGUCGAa -3'
miRNA:   3'- -GGCCGU---------UGcGUUGCCGGUCGUAGUUc -5'
26451 5' -54.3 NC_005357.1 + 28403 0.76 0.211701
Target:  5'- gCCGGCGGCGCGGCG-CCAGUAg---- -3'
miRNA:   3'- -GGCCGUUGCGUUGCcGGUCGUaguuc -5'
26451 5' -54.3 NC_005357.1 + 4275 0.76 0.195026
Target:  5'- gCCGGCAugGUGAUGGCC-GUGUCGGc -3'
miRNA:   3'- -GGCCGUugCGUUGCCGGuCGUAGUUc -5'
26451 5' -54.3 NC_005357.1 + 19632 0.78 0.139365
Target:  5'- gCgGGCcGCGaCAuCGGCCAGCGUCGGGu -3'
miRNA:   3'- -GgCCGuUGC-GUuGCCGGUCGUAGUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.