miRNA display CGI


Results 1 - 20 of 182 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26451 5' -54.3 NC_005357.1 + 5273 0.66 0.679774
Target:  5'- aCCGuguugauguucGCGGCGUuguCGGCCacGGCGUCGAu -3'
miRNA:   3'- -GGC-----------CGUUGCGuu-GCCGG--UCGUAGUUc -5'
26451 5' -54.3 NC_005357.1 + 16440 0.66 0.679774
Target:  5'- gCCGGCGGCGUugaacACGGCgucgUAG-AUCGGGg -3'
miRNA:   3'- -GGCCGUUGCGu----UGCCG----GUCgUAGUUC- -5'
26451 5' -54.3 NC_005357.1 + 23143 0.66 0.713094
Target:  5'- cCCaGGCGaccACGCuguucuACGGCgauucCAGCAUCGAc -3'
miRNA:   3'- -GG-CCGU---UGCGu-----UGCCG-----GUCGUAGUUc -5'
26451 5' -54.3 NC_005357.1 + 7199 0.66 0.668556
Target:  5'- gCCGGgaCAGCGCGauguccACGGC-AGCAUCu-- -3'
miRNA:   3'- -GGCC--GUUGCGU------UGCCGgUCGUAGuuc -5'
26451 5' -54.3 NC_005357.1 + 15948 0.66 0.667432
Target:  5'- gCGGCGccuuCGCGuaGGCCAGUccagaauGUCGAGa -3'
miRNA:   3'- gGCCGUu---GCGUugCCGGUCG-------UAGUUC- -5'
26451 5' -54.3 NC_005357.1 + 30419 0.66 0.702055
Target:  5'- cUCGGCAugGCGAUGaGCgCGGg--CAGGg -3'
miRNA:   3'- -GGCCGUugCGUUGC-CG-GUCguaGUUC- -5'
26451 5' -54.3 NC_005357.1 + 12630 0.66 0.667432
Target:  5'- cUCGGCAuCGCuGCuGCCguccuuuGGCGUCGGGu -3'
miRNA:   3'- -GGCCGUuGCGuUGcCGG-------UCGUAGUUC- -5'
26451 5' -54.3 NC_005357.1 + 449 0.66 0.702055
Target:  5'- -gGGCuGCuGC-GCGGCCAGCuugCGGGc -3'
miRNA:   3'- ggCCGuUG-CGuUGCCGGUCGua-GUUC- -5'
26451 5' -54.3 NC_005357.1 + 11379 0.66 0.713094
Target:  5'- cCCGGCAccucggugGCGaccugAugGGCCAGgGUCu-- -3'
miRNA:   3'- -GGCCGU--------UGCg----UugCCGGUCgUAGuuc -5'
26451 5' -54.3 NC_005357.1 + 23532 0.66 0.690945
Target:  5'- uCCaGGCGGCGCAcGCGGUCgauGGCcUCGGc -3'
miRNA:   3'- -GG-CCGUUGCGU-UGCCGG---UCGuAGUUc -5'
26451 5' -54.3 NC_005357.1 + 18321 0.66 0.679774
Target:  5'- aCGGCAguagcgGCGCAGCuuGGUgGGCAUaGGGa -3'
miRNA:   3'- gGCCGU------UGCGUUG--CCGgUCGUAgUUC- -5'
26451 5' -54.3 NC_005357.1 + 7321 0.66 0.702055
Target:  5'- aUGGUcugcgAACGCAGCaGCCgguuGGCGUCGAu -3'
miRNA:   3'- gGCCG-----UUGCGUUGcCGG----UCGUAGUUc -5'
26451 5' -54.3 NC_005357.1 + 1043 0.66 0.68983
Target:  5'- gCCGGCGGCaGCAugucgccGCGaaCCGGCGUCcAGu -3'
miRNA:   3'- -GGCCGUUG-CGU-------UGCc-GGUCGUAGuUC- -5'
26451 5' -54.3 NC_005357.1 + 10875 0.66 0.713094
Target:  5'- uUCGGuCGGCGCGAUGcGCgCGGCGUa--- -3'
miRNA:   3'- -GGCC-GUUGCGUUGC-CG-GUCGUAguuc -5'
26451 5' -54.3 NC_005357.1 + 41974 0.66 0.713094
Target:  5'- gCGGUggUGC-GCGGCgAGCAg-AAGg -3'
miRNA:   3'- gGCCGuuGCGuUGCCGgUCGUagUUC- -5'
26451 5' -54.3 NC_005357.1 + 41253 0.66 0.679774
Target:  5'- aCGGCAGCGCGauACGGCU-GUccuUCAc- -3'
miRNA:   3'- gGCCGUUGCGU--UGCCGGuCGu--AGUuc -5'
26451 5' -54.3 NC_005357.1 + 994 0.66 0.679774
Target:  5'- cCUGGCggUGCcgUGGUucaccgCAGCGUCGAa -3'
miRNA:   3'- -GGCCGuuGCGuuGCCG------GUCGUAGUUc -5'
26451 5' -54.3 NC_005357.1 + 23282 0.66 0.66968
Target:  5'- gUCGGCGuGCGCcacgaaugccuguuuGCGGCCGGCAcuggcCGGGa -3'
miRNA:   3'- -GGCCGU-UGCGu--------------UGCCGGUCGUa----GUUC- -5'
26451 5' -54.3 NC_005357.1 + 35092 0.66 0.668556
Target:  5'- -aGGCcGCGCucaaGGCCAuGCGucUCAAGg -3'
miRNA:   3'- ggCCGuUGCGuug-CCGGU-CGU--AGUUC- -5'
26451 5' -54.3 NC_005357.1 + 16774 0.66 0.678654
Target:  5'- aCCGGCGACGUgaaGGCGauggucgccaguuGCCAGUugGUCGc- -3'
miRNA:   3'- -GGCCGUUGCG---UUGC-------------CGGUCG--UAGUuc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.