Results 1 - 20 of 182 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26451 | 5' | -54.3 | NC_005357.1 | + | 247 | 0.66 | 0.684249 |
Target: 5'- gCCGGCGguagcgaauccccagGCGCuugaGGCaCGGCGUCcAGu -3' miRNA: 3'- -GGCCGU---------------UGCGuug-CCG-GUCGUAGuUC- -5' |
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26451 | 5' | -54.3 | NC_005357.1 | + | 449 | 0.66 | 0.702055 |
Target: 5'- -gGGCuGCuGC-GCGGCCAGCuugCGGGc -3' miRNA: 3'- ggCCGuUG-CGuUGCCGGUCGua-GUUC- -5' |
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26451 | 5' | -54.3 | NC_005357.1 | + | 618 | 0.72 | 0.36447 |
Target: 5'- gCCaGCAGCGCcguggacacGGCGuCCGGCGUCGAGu -3' miRNA: 3'- -GGcCGUUGCG---------UUGCcGGUCGUAGUUC- -5' |
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26451 | 5' | -54.3 | NC_005357.1 | + | 687 | 0.68 | 0.545147 |
Target: 5'- aCGGCGGCGC--CGGCCgGGCcgccCAAGa -3' miRNA: 3'- gGCCGUUGCGuuGCCGG-UCGua--GUUC- -5' |
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26451 | 5' | -54.3 | NC_005357.1 | + | 803 | 0.7 | 0.439826 |
Target: 5'- uCCGGCGACGCGccGCGcCCAGCccuugccgaacGUCGGc -3' miRNA: 3'- -GGCCGUUGCGU--UGCcGGUCG-----------UAGUUc -5' |
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26451 | 5' | -54.3 | NC_005357.1 | + | 994 | 0.66 | 0.679774 |
Target: 5'- cCUGGCggUGCcgUGGUucaccgCAGCGUCGAa -3' miRNA: 3'- -GGCCGuuGCGuuGCCG------GUCGUAGUUc -5' |
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26451 | 5' | -54.3 | NC_005357.1 | + | 1043 | 0.66 | 0.68983 |
Target: 5'- gCCGGCGGCaGCAugucgccGCGaaCCGGCGUCcAGu -3' miRNA: 3'- -GGCCGUUG-CGU-------UGCc-GGUCGUAGuUC- -5' |
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26451 | 5' | -54.3 | NC_005357.1 | + | 2411 | 0.69 | 0.534182 |
Target: 5'- gCGGCAagcguagguguACgGCAGCaGGCCGGCcUCGAa -3' miRNA: 3'- gGCCGU-----------UG-CGUUG-CCGGUCGuAGUUc -5' |
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26451 | 5' | -54.3 | NC_005357.1 | + | 2573 | 0.68 | 0.582915 |
Target: 5'- gCCGGCuuugaguucagcuUGCAA-GGCCAGCAgguuggCGAGg -3' miRNA: 3'- -GGCCGuu-----------GCGUUgCCGGUCGUa-----GUUC- -5' |
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26451 | 5' | -54.3 | NC_005357.1 | + | 2835 | 0.75 | 0.235829 |
Target: 5'- gCGGCcacGCGCAGCGgcGCCAGCAccagCGAGg -3' miRNA: 3'- gGCCGu--UGCGUUGC--CGGUCGUa---GUUC- -5' |
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26451 | 5' | -54.3 | NC_005357.1 | + | 3700 | 0.67 | 0.61215 |
Target: 5'- aCGGCGACGCGcugccccauGCGGC--GCAUCc-- -3' miRNA: 3'- gGCCGUUGCGU---------UGCCGguCGUAGuuc -5' |
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26451 | 5' | -54.3 | NC_005357.1 | + | 4048 | 0.75 | 0.217527 |
Target: 5'- gCGGCGA-GCGGCaGGCCAGCGgccCAGGg -3' miRNA: 3'- gGCCGUUgCGUUG-CCGGUCGUa--GUUC- -5' |
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26451 | 5' | -54.3 | NC_005357.1 | + | 4275 | 0.76 | 0.195026 |
Target: 5'- gCCGGCAugGUGAUGGCC-GUGUCGGc -3' miRNA: 3'- -GGCCGUugCGUUGCCGGuCGUAGUUc -5' |
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26451 | 5' | -54.3 | NC_005357.1 | + | 4641 | 0.74 | 0.276295 |
Target: 5'- -gGGCcACGCugcguCGGCCAucGCGUCAAGg -3' miRNA: 3'- ggCCGuUGCGuu---GCCGGU--CGUAGUUC- -5' |
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26451 | 5' | -54.3 | NC_005357.1 | + | 4688 | 0.69 | 0.491182 |
Target: 5'- gCCGGaUAGCGCGGCgagaauGGCCGGCAa---- -3' miRNA: 3'- -GGCC-GUUGCGUUG------CCGGUCGUaguuc -5' |
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26451 | 5' | -54.3 | NC_005357.1 | + | 4802 | 0.7 | 0.429923 |
Target: 5'- gCCGGCuGGCGCugcgggauuGCuGGCCGGCGaCAGGu -3' miRNA: 3'- -GGCCG-UUGCGu--------UG-CCGGUCGUaGUUC- -5' |
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26451 | 5' | -54.3 | NC_005357.1 | + | 4830 | 0.67 | 0.608767 |
Target: 5'- gCCGGCGccgucgucgaauucACGgaaAGCGGCCAGCuucCAAu -3' miRNA: 3'- -GGCCGU--------------UGCg--UUGCCGGUCGua-GUUc -5' |
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26451 | 5' | -54.3 | NC_005357.1 | + | 4925 | 0.69 | 0.479636 |
Target: 5'- gUCGGCAGCgaugcccGCGACGGUCuGCAcgucugCGAGg -3' miRNA: 3'- -GGCCGUUG-------CGUUGCCGGuCGUa-----GUUC- -5' |
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26451 | 5' | -54.3 | NC_005357.1 | + | 5232 | 0.74 | 0.269184 |
Target: 5'- cCCaGCAguucGCGCAGuuCGGCCGGCAggUCGGGg -3' miRNA: 3'- -GGcCGU----UGCGUU--GCCGGUCGU--AGUUC- -5' |
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26451 | 5' | -54.3 | NC_005357.1 | + | 5267 | 0.73 | 0.298527 |
Target: 5'- gUCGGCAAUGCGuCGuuCCAGCGUCGAu -3' miRNA: 3'- -GGCCGUUGCGUuGCc-GGUCGUAGUUc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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