miRNA display CGI


Results 1 - 20 of 182 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26451 5' -54.3 NC_005357.1 + 247 0.66 0.684249
Target:  5'- gCCGGCGguagcgaauccccagGCGCuugaGGCaCGGCGUCcAGu -3'
miRNA:   3'- -GGCCGU---------------UGCGuug-CCG-GUCGUAGuUC- -5'
26451 5' -54.3 NC_005357.1 + 449 0.66 0.702055
Target:  5'- -gGGCuGCuGC-GCGGCCAGCuugCGGGc -3'
miRNA:   3'- ggCCGuUG-CGuUGCCGGUCGua-GUUC- -5'
26451 5' -54.3 NC_005357.1 + 618 0.72 0.36447
Target:  5'- gCCaGCAGCGCcguggacacGGCGuCCGGCGUCGAGu -3'
miRNA:   3'- -GGcCGUUGCG---------UUGCcGGUCGUAGUUC- -5'
26451 5' -54.3 NC_005357.1 + 687 0.68 0.545147
Target:  5'- aCGGCGGCGC--CGGCCgGGCcgccCAAGa -3'
miRNA:   3'- gGCCGUUGCGuuGCCGG-UCGua--GUUC- -5'
26451 5' -54.3 NC_005357.1 + 803 0.7 0.439826
Target:  5'- uCCGGCGACGCGccGCGcCCAGCccuugccgaacGUCGGc -3'
miRNA:   3'- -GGCCGUUGCGU--UGCcGGUCG-----------UAGUUc -5'
26451 5' -54.3 NC_005357.1 + 994 0.66 0.679774
Target:  5'- cCUGGCggUGCcgUGGUucaccgCAGCGUCGAa -3'
miRNA:   3'- -GGCCGuuGCGuuGCCG------GUCGUAGUUc -5'
26451 5' -54.3 NC_005357.1 + 1043 0.66 0.68983
Target:  5'- gCCGGCGGCaGCAugucgccGCGaaCCGGCGUCcAGu -3'
miRNA:   3'- -GGCCGUUG-CGU-------UGCc-GGUCGUAGuUC- -5'
26451 5' -54.3 NC_005357.1 + 2411 0.69 0.534182
Target:  5'- gCGGCAagcguagguguACgGCAGCaGGCCGGCcUCGAa -3'
miRNA:   3'- gGCCGU-----------UG-CGUUG-CCGGUCGuAGUUc -5'
26451 5' -54.3 NC_005357.1 + 2573 0.68 0.582915
Target:  5'- gCCGGCuuugaguucagcuUGCAA-GGCCAGCAgguuggCGAGg -3'
miRNA:   3'- -GGCCGuu-----------GCGUUgCCGGUCGUa-----GUUC- -5'
26451 5' -54.3 NC_005357.1 + 2835 0.75 0.235829
Target:  5'- gCGGCcacGCGCAGCGgcGCCAGCAccagCGAGg -3'
miRNA:   3'- gGCCGu--UGCGUUGC--CGGUCGUa---GUUC- -5'
26451 5' -54.3 NC_005357.1 + 3700 0.67 0.61215
Target:  5'- aCGGCGACGCGcugccccauGCGGC--GCAUCc-- -3'
miRNA:   3'- gGCCGUUGCGU---------UGCCGguCGUAGuuc -5'
26451 5' -54.3 NC_005357.1 + 4048 0.75 0.217527
Target:  5'- gCGGCGA-GCGGCaGGCCAGCGgccCAGGg -3'
miRNA:   3'- gGCCGUUgCGUUG-CCGGUCGUa--GUUC- -5'
26451 5' -54.3 NC_005357.1 + 4275 0.76 0.195026
Target:  5'- gCCGGCAugGUGAUGGCC-GUGUCGGc -3'
miRNA:   3'- -GGCCGUugCGUUGCCGGuCGUAGUUc -5'
26451 5' -54.3 NC_005357.1 + 4641 0.74 0.276295
Target:  5'- -gGGCcACGCugcguCGGCCAucGCGUCAAGg -3'
miRNA:   3'- ggCCGuUGCGuu---GCCGGU--CGUAGUUC- -5'
26451 5' -54.3 NC_005357.1 + 4688 0.69 0.491182
Target:  5'- gCCGGaUAGCGCGGCgagaauGGCCGGCAa---- -3'
miRNA:   3'- -GGCC-GUUGCGUUG------CCGGUCGUaguuc -5'
26451 5' -54.3 NC_005357.1 + 4802 0.7 0.429923
Target:  5'- gCCGGCuGGCGCugcgggauuGCuGGCCGGCGaCAGGu -3'
miRNA:   3'- -GGCCG-UUGCGu--------UG-CCGGUCGUaGUUC- -5'
26451 5' -54.3 NC_005357.1 + 4830 0.67 0.608767
Target:  5'- gCCGGCGccgucgucgaauucACGgaaAGCGGCCAGCuucCAAu -3'
miRNA:   3'- -GGCCGU--------------UGCg--UUGCCGGUCGua-GUUc -5'
26451 5' -54.3 NC_005357.1 + 4925 0.69 0.479636
Target:  5'- gUCGGCAGCgaugcccGCGACGGUCuGCAcgucugCGAGg -3'
miRNA:   3'- -GGCCGUUG-------CGUUGCCGGuCGUa-----GUUC- -5'
26451 5' -54.3 NC_005357.1 + 5232 0.74 0.269184
Target:  5'- cCCaGCAguucGCGCAGuuCGGCCGGCAggUCGGGg -3'
miRNA:   3'- -GGcCGU----UGCGUU--GCCGGUCGU--AGUUC- -5'
26451 5' -54.3 NC_005357.1 + 5267 0.73 0.298527
Target:  5'- gUCGGCAAUGCGuCGuuCCAGCGUCGAu -3'
miRNA:   3'- -GGCCGUUGCGUuGCc-GGUCGUAGUUc -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.