miRNA display CGI


Results 21 - 40 of 182 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26451 5' -54.3 NC_005357.1 + 5273 0.66 0.679774
Target:  5'- aCCGuguugauguucGCGGCGUuguCGGCCacGGCGUCGAu -3'
miRNA:   3'- -GGC-----------CGUUGCGuu-GCCGG--UCGUAGUUc -5'
26451 5' -54.3 NC_005357.1 + 5439 0.69 0.534182
Target:  5'- aUGGCGGCGUGGgcgaGGUCGGUAUCGAc -3'
miRNA:   3'- gGCCGUUGCGUUg---CCGGUCGUAGUUc -5'
26451 5' -54.3 NC_005357.1 + 5934 0.7 0.449857
Target:  5'- cCUGGUugucauucAGCGCAACGGuguaguccguacCCAGgGUCAAGg -3'
miRNA:   3'- -GGCCG--------UUGCGUUGCC------------GGUCgUAGUUC- -5'
26451 5' -54.3 NC_005357.1 + 6379 0.69 0.523296
Target:  5'- gUCGGCAaucagGCGCAGgcCGGCCGGCccgguguaGUCGc- -3'
miRNA:   3'- -GGCCGU-----UGCGUU--GCCGGUCG--------UAGUuc -5'
26451 5' -54.3 NC_005357.1 + 7199 0.66 0.668556
Target:  5'- gCCGGgaCAGCGCGauguccACGGC-AGCAUCu-- -3'
miRNA:   3'- -GGCC--GUUGCGU------UGCCGgUCGUAGuuc -5'
26451 5' -54.3 NC_005357.1 + 7321 0.66 0.702055
Target:  5'- aUGGUcugcgAACGCAGCaGCCgguuGGCGUCGAu -3'
miRNA:   3'- gGCCG-----UUGCGUUGcCGG----UCGUAGUUc -5'
26451 5' -54.3 NC_005357.1 + 7426 0.67 0.657302
Target:  5'- aCCGG-AugGC--CGGCCAGCAguUCGGc -3'
miRNA:   3'- -GGCCgUugCGuuGCCGGUCGU--AGUUc -5'
26451 5' -54.3 NC_005357.1 + 7452 0.67 0.61215
Target:  5'- uUCGGCcuucGCGCgAAUGGCCuuGCAcCAGGa -3'
miRNA:   3'- -GGCCGu---UGCG-UUGCCGGu-CGUaGUUC- -5'
26451 5' -54.3 NC_005357.1 + 7684 0.71 0.410519
Target:  5'- uUGGCGGCGaucuGCGGCCGGUAgcccUCGAa -3'
miRNA:   3'- gGCCGUUGCgu--UGCCGGUCGU----AGUUc -5'
26451 5' -54.3 NC_005357.1 + 7724 0.67 0.600882
Target:  5'- aCuGCAGCGCAcgcucgGCGGCCGGCu----- -3'
miRNA:   3'- gGcCGUUGCGU------UGCCGGUCGuaguuc -5'
26451 5' -54.3 NC_005357.1 + 8115 0.7 0.460012
Target:  5'- cCCuGCAcCGC-GCGGCCGGCGUUg-- -3'
miRNA:   3'- -GGcCGUuGCGuUGCCGGUCGUAGuuc -5'
26451 5' -54.3 NC_005357.1 + 8440 0.68 0.556183
Target:  5'- gCGGaacauCGGCGCGAU-GUCGGCGUCGAGg -3'
miRNA:   3'- gGCC-----GUUGCGUUGcCGGUCGUAGUUC- -5'
26451 5' -54.3 NC_005357.1 + 8651 0.69 0.512496
Target:  5'- gCCGGCcuucauCGC-GCGGUCGGCAUUg-- -3'
miRNA:   3'- -GGCCGuu----GCGuUGCCGGUCGUAGuuc -5'
26451 5' -54.3 NC_005357.1 + 8737 0.66 0.668556
Target:  5'- cCCGGCgGGCGCGGCG-CUAcCGUCAAc -3'
miRNA:   3'- -GGCCG-UUGCGUUGCcGGUcGUAGUUc -5'
26451 5' -54.3 NC_005357.1 + 8874 0.69 0.50179
Target:  5'- gCGGUAGCGUu-CGGCCuuGGCGUCc-- -3'
miRNA:   3'- gGCCGUUGCGuuGCCGG--UCGUAGuuc -5'
26451 5' -54.3 NC_005357.1 + 8912 0.69 0.491182
Target:  5'- aUCGGCGGCGCGcucgAUGGCUucgGGCGUgGAc -3'
miRNA:   3'- -GGCCGUUGCGU----UGCCGG---UCGUAgUUc -5'
26451 5' -54.3 NC_005357.1 + 9208 0.66 0.684249
Target:  5'- cUCGGCGGCGCGGCGcacguucugcggcgcGCCcGGCggCAGu -3'
miRNA:   3'- -GGCCGUUGCGUUGC---------------CGG-UCGuaGUUc -5'
26451 5' -54.3 NC_005357.1 + 9318 0.72 0.346224
Target:  5'- cCUGGCGGCGCAcgucggcGCGGCgGGCggCGGc -3'
miRNA:   3'- -GGCCGUUGCGU-------UGCCGgUCGuaGUUc -5'
26451 5' -54.3 NC_005357.1 + 9628 0.69 0.523296
Target:  5'- aCCGGCAgacGCGCAGCa-CCAGCGaggugcCGAGg -3'
miRNA:   3'- -GGCCGU---UGCGUUGccGGUCGUa-----GUUC- -5'
26451 5' -54.3 NC_005357.1 + 9817 0.68 0.567284
Target:  5'- gCGGCGuCGCGGCccuugacgcgGGCCAGCuugGUCAc- -3'
miRNA:   3'- gGCCGUuGCGUUG----------CCGGUCG---UAGUuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.