miRNA display CGI


Results 21 - 40 of 182 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26451 5' -54.3 NC_005357.1 + 35983 0.67 0.61215
Target:  5'- aCGGCGACGCcuucGCGGgCGGUgguGUCGc- -3'
miRNA:   3'- gGCCGUUGCGu---UGCCgGUCG---UAGUuc -5'
26451 5' -54.3 NC_005357.1 + 35884 0.7 0.470288
Target:  5'- gCgGGCugcuACGuCAAC-GCCAGCAUCGAa -3'
miRNA:   3'- -GgCCGu---UGC-GUUGcCGGUCGUAGUUc -5'
26451 5' -54.3 NC_005357.1 + 35248 0.66 0.668556
Target:  5'- cCCGGCuGCGuCAGgGcGUCAGCgcGUCGGGc -3'
miRNA:   3'- -GGCCGuUGC-GUUgC-CGGUCG--UAGUUC- -5'
26451 5' -54.3 NC_005357.1 + 35092 0.66 0.668556
Target:  5'- -aGGCcGCGCucaaGGCCAuGCGucUCAAGg -3'
miRNA:   3'- ggCCGuUGCGuug-CCGGU-CGU--AGUUC- -5'
26451 5' -54.3 NC_005357.1 + 34381 0.69 0.48068
Target:  5'- aUGGUcgaGCAGCGGUUgAGCGUCGAGg -3'
miRNA:   3'- gGCCGuugCGUUGCCGG-UCGUAGUUC- -5'
26451 5' -54.3 NC_005357.1 + 34040 0.76 0.206011
Target:  5'- aCUGGCuACGCAGCcagcgcgaGGCCGGguUCGAGc -3'
miRNA:   3'- -GGCCGuUGCGUUG--------CCGGUCguAGUUC- -5'
26451 5' -54.3 NC_005357.1 + 33978 0.71 0.420153
Target:  5'- aCGGUucgaucuGCGCAAgGGCCaaAGCcUCAAGg -3'
miRNA:   3'- gGCCGu------UGCGUUgCCGG--UCGuAGUUC- -5'
26451 5' -54.3 NC_005357.1 + 33797 0.72 0.338607
Target:  5'- gCCGGCGAccucgccacCGCAGCGGCCgagaAGCG-CAAc -3'
miRNA:   3'- -GGCCGUU---------GCGUUGCCGG----UCGUaGUUc -5'
26451 5' -54.3 NC_005357.1 + 33758 0.69 0.523296
Target:  5'- -gGGCGGCGCAGCaGCCGcuGCAcacagCGAGu -3'
miRNA:   3'- ggCCGUUGCGUUGcCGGU--CGUa----GUUC- -5'
26451 5' -54.3 NC_005357.1 + 33711 0.67 0.61215
Target:  5'- cCCGGCucaagguGCGCGAcauccgaccCGGCCAGUA-CAc- -3'
miRNA:   3'- -GGCCGu------UGCGUU---------GCCGGUCGUaGUuc -5'
26451 5' -54.3 NC_005357.1 + 33335 0.69 0.512496
Target:  5'- aCCGGCAagaACgGCcucGCGGCCAGUGagGGGa -3'
miRNA:   3'- -GGCCGU---UG-CGu--UGCCGGUCGUagUUC- -5'
26451 5' -54.3 NC_005357.1 + 33083 0.68 0.567284
Target:  5'- gCaGCGACGCGGCGGCCuaCAUCc-- -3'
miRNA:   3'- gGcCGUUGCGUUGCCGGucGUAGuuc -5'
26451 5' -54.3 NC_005357.1 + 33052 0.67 0.646023
Target:  5'- gUGGCugcacAAUGCAcGCGGCC-GCAUCAu- -3'
miRNA:   3'- gGCCG-----UUGCGU-UGCCGGuCGUAGUuc -5'
26451 5' -54.3 NC_005357.1 + 32844 0.71 0.420153
Target:  5'- aCGGCuuCGCcuggccgcaGACGGUCGGCGcCGAGa -3'
miRNA:   3'- gGCCGuuGCG---------UUGCCGGUCGUaGUUC- -5'
26451 5' -54.3 NC_005357.1 + 32640 0.67 0.623437
Target:  5'- uUCGGCGuGCGCGACcuGGCC-GCGUgGAa -3'
miRNA:   3'- -GGCCGU-UGCGUUG--CCGGuCGUAgUUc -5'
26451 5' -54.3 NC_005357.1 + 32587 0.69 0.491182
Target:  5'- aCCGcCGACGCugugaccaAGCuGGCCcGCGUCAAGg -3'
miRNA:   3'- -GGCcGUUGCG--------UUG-CCGGuCGUAGUUC- -5'
26451 5' -54.3 NC_005357.1 + 31900 0.72 0.355699
Target:  5'- gUGGCGGCGgaaagcguggcCGGCGGUCAGCAguucgUCAAGa -3'
miRNA:   3'- gGCCGUUGC-----------GUUGCCGGUCGU-----AGUUC- -5'
26451 5' -54.3 NC_005357.1 + 31431 0.67 0.61215
Target:  5'- aCGGCGACGCcacgaucuGCGGCgUGGuCAUCGGa -3'
miRNA:   3'- gGCCGUUGCGu-------UGCCG-GUC-GUAGUUc -5'
26451 5' -54.3 NC_005357.1 + 31258 0.69 0.530907
Target:  5'- aCGGCcgaccAGCGCAcgcaacgugcgcagGCGGCCcAGCAgCAGGc -3'
miRNA:   3'- gGCCG-----UUGCGU--------------UGCCGG-UCGUaGUUC- -5'
26451 5' -54.3 NC_005357.1 + 30864 0.69 0.48068
Target:  5'- gCGGCAugGCuucgaugaccGGCGGgCAGUccuAUCAGGa -3'
miRNA:   3'- gGCCGUugCG----------UUGCCgGUCG---UAGUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.