miRNA display CGI


Results 41 - 60 of 182 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26451 5' -54.3 NC_005357.1 + 30826 0.67 0.646023
Target:  5'- gCUGGCAcugcuGCcCGGCGGCCAGCcggCGGc -3'
miRNA:   3'- -GGCCGU-----UGcGUUGCCGGUCGua-GUUc -5'
26451 5' -54.3 NC_005357.1 + 30419 0.66 0.702055
Target:  5'- cUCGGCAugGCGAUGaGCgCGGg--CAGGg -3'
miRNA:   3'- -GGCCGUugCGUUGC-CG-GUCguaGUUC- -5'
26451 5' -54.3 NC_005357.1 + 30297 0.66 0.717487
Target:  5'- uCgGGUAGCGCcccuGCGaGCCGcuuugcguguacuucGCGUCGGGg -3'
miRNA:   3'- -GgCCGUUGCGu---UGC-CGGU---------------CGUAGUUC- -5'
26451 5' -54.3 NC_005357.1 + 30237 0.68 0.578439
Target:  5'- -aGGCAGCGCG--GGCCGGUuUCGu- -3'
miRNA:   3'- ggCCGUUGCGUugCCGGUCGuAGUuc -5'
26451 5' -54.3 NC_005357.1 + 30146 0.7 0.449857
Target:  5'- gCCGGC-ACGCug-GGCCAGCAacccgccCAGGa -3'
miRNA:   3'- -GGCCGuUGCGuugCCGGUCGUa------GUUC- -5'
26451 5' -54.3 NC_005357.1 + 29997 0.66 0.713094
Target:  5'- gUCGGCGacaucgacaGCGCcACcaaGGaCGGCAUCAAGg -3'
miRNA:   3'- -GGCCGU---------UGCGuUG---CCgGUCGUAGUUC- -5'
26451 5' -54.3 NC_005357.1 + 29866 0.76 0.211701
Target:  5'- gCCGcGCAGCGCGA-GGCCGGCAagAAa -3'
miRNA:   3'- -GGC-CGUUGCGUUgCCGGUCGUagUUc -5'
26451 5' -54.3 NC_005357.1 + 29460 0.69 0.523296
Target:  5'- cCUGGCAccaggcgacgaaGCGC-GCGGCCAguuccGCGUCGGu -3'
miRNA:   3'- -GGCCGU------------UGCGuUGCCGGU-----CGUAGUUc -5'
26451 5' -54.3 NC_005357.1 + 29320 0.67 0.646023
Target:  5'- gCCGGCAAccCGgAACGGCuCAagauugcgcGCGUgGAGg -3'
miRNA:   3'- -GGCCGUU--GCgUUGCCG-GU---------CGUAgUUC- -5'
26451 5' -54.3 NC_005357.1 + 29248 0.7 0.448848
Target:  5'- gCCGGCcaagggcgcccAGCGCGGCcgacacuGGCCGaCAUCGAGg -3'
miRNA:   3'- -GGCCG-----------UUGCGUUG-------CCGGUcGUAGUUC- -5'
26451 5' -54.3 NC_005357.1 + 29021 0.69 0.491182
Target:  5'- aCCaGGCGccGCGCuuCGGCCAG-GUCGAu -3'
miRNA:   3'- -GG-CCGU--UGCGuuGCCGGUCgUAGUUc -5'
26451 5' -54.3 NC_005357.1 + 28920 0.67 0.623437
Target:  5'- aCGGCAAaccgcuuaccuCGCccaaggcGCGGUCGGCAUCGc- -3'
miRNA:   3'- gGCCGUU-----------GCGu------UGCCGGUCGUAGUuc -5'
26451 5' -54.3 NC_005357.1 + 28670 0.7 0.439826
Target:  5'- gCCGGCGgccucgccaGCGCGGCGcGCCA-CGUCGu- -3'
miRNA:   3'- -GGCCGU---------UGCGUUGC-CGGUcGUAGUuc -5'
26451 5' -54.3 NC_005357.1 + 28590 0.67 0.623437
Target:  5'- aCCGGCAGCGUGGuguCGGUCAGUu----- -3'
miRNA:   3'- -GGCCGUUGCGUU---GCCGGUCGuaguuc -5'
26451 5' -54.3 NC_005357.1 + 28403 0.76 0.211701
Target:  5'- gCCGGCGGCGCGGCG-CCAGUAg---- -3'
miRNA:   3'- -GGCCGUUGCGUUGCcGGUCGUaguuc -5'
26451 5' -54.3 NC_005357.1 + 28133 0.68 0.556183
Target:  5'- uUCaGCAACGaCGugGGCC-GCAUCGc- -3'
miRNA:   3'- -GGcCGUUGC-GUugCCGGuCGUAGUuc -5'
26451 5' -54.3 NC_005357.1 + 27726 0.66 0.668556
Target:  5'- -gGGCAuggagGCGCAACugcaGGCCgGGCuUCAAGc -3'
miRNA:   3'- ggCCGU-----UGCGUUG----CCGG-UCGuAGUUC- -5'
26451 5' -54.3 NC_005357.1 + 27501 0.68 0.545147
Target:  5'- gCCGGCGGCcuCGGCcGCCAGCuucucggcgcgGUCGGGg -3'
miRNA:   3'- -GGCCGUUGc-GUUGcCGGUCG-----------UAGUUC- -5'
26451 5' -54.3 NC_005357.1 + 27501 0.66 0.665183
Target:  5'- -gGGC-GCGCAGucggcacuugaggcCGGCCAGCAgCAGa -3'
miRNA:   3'- ggCCGuUGCGUU--------------GCCGGUCGUaGUUc -5'
26451 5' -54.3 NC_005357.1 + 27469 0.68 0.589642
Target:  5'- aCCGGCGACuuCAAC-GCgAGCAUCGc- -3'
miRNA:   3'- -GGCCGUUGc-GUUGcCGgUCGUAGUuc -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.