Results 41 - 60 of 182 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26451 | 5' | -54.3 | NC_005357.1 | + | 30826 | 0.67 | 0.646023 |
Target: 5'- gCUGGCAcugcuGCcCGGCGGCCAGCcggCGGc -3' miRNA: 3'- -GGCCGU-----UGcGUUGCCGGUCGua-GUUc -5' |
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26451 | 5' | -54.3 | NC_005357.1 | + | 30419 | 0.66 | 0.702055 |
Target: 5'- cUCGGCAugGCGAUGaGCgCGGg--CAGGg -3' miRNA: 3'- -GGCCGUugCGUUGC-CG-GUCguaGUUC- -5' |
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26451 | 5' | -54.3 | NC_005357.1 | + | 30297 | 0.66 | 0.717487 |
Target: 5'- uCgGGUAGCGCcccuGCGaGCCGcuuugcguguacuucGCGUCGGGg -3' miRNA: 3'- -GgCCGUUGCGu---UGC-CGGU---------------CGUAGUUC- -5' |
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26451 | 5' | -54.3 | NC_005357.1 | + | 30237 | 0.68 | 0.578439 |
Target: 5'- -aGGCAGCGCG--GGCCGGUuUCGu- -3' miRNA: 3'- ggCCGUUGCGUugCCGGUCGuAGUuc -5' |
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26451 | 5' | -54.3 | NC_005357.1 | + | 30146 | 0.7 | 0.449857 |
Target: 5'- gCCGGC-ACGCug-GGCCAGCAacccgccCAGGa -3' miRNA: 3'- -GGCCGuUGCGuugCCGGUCGUa------GUUC- -5' |
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26451 | 5' | -54.3 | NC_005357.1 | + | 29997 | 0.66 | 0.713094 |
Target: 5'- gUCGGCGacaucgacaGCGCcACcaaGGaCGGCAUCAAGg -3' miRNA: 3'- -GGCCGU---------UGCGuUG---CCgGUCGUAGUUC- -5' |
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26451 | 5' | -54.3 | NC_005357.1 | + | 29866 | 0.76 | 0.211701 |
Target: 5'- gCCGcGCAGCGCGA-GGCCGGCAagAAa -3' miRNA: 3'- -GGC-CGUUGCGUUgCCGGUCGUagUUc -5' |
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26451 | 5' | -54.3 | NC_005357.1 | + | 29460 | 0.69 | 0.523296 |
Target: 5'- cCUGGCAccaggcgacgaaGCGC-GCGGCCAguuccGCGUCGGu -3' miRNA: 3'- -GGCCGU------------UGCGuUGCCGGU-----CGUAGUUc -5' |
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26451 | 5' | -54.3 | NC_005357.1 | + | 29320 | 0.67 | 0.646023 |
Target: 5'- gCCGGCAAccCGgAACGGCuCAagauugcgcGCGUgGAGg -3' miRNA: 3'- -GGCCGUU--GCgUUGCCG-GU---------CGUAgUUC- -5' |
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26451 | 5' | -54.3 | NC_005357.1 | + | 29248 | 0.7 | 0.448848 |
Target: 5'- gCCGGCcaagggcgcccAGCGCGGCcgacacuGGCCGaCAUCGAGg -3' miRNA: 3'- -GGCCG-----------UUGCGUUG-------CCGGUcGUAGUUC- -5' |
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26451 | 5' | -54.3 | NC_005357.1 | + | 29021 | 0.69 | 0.491182 |
Target: 5'- aCCaGGCGccGCGCuuCGGCCAG-GUCGAu -3' miRNA: 3'- -GG-CCGU--UGCGuuGCCGGUCgUAGUUc -5' |
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26451 | 5' | -54.3 | NC_005357.1 | + | 28920 | 0.67 | 0.623437 |
Target: 5'- aCGGCAAaccgcuuaccuCGCccaaggcGCGGUCGGCAUCGc- -3' miRNA: 3'- gGCCGUU-----------GCGu------UGCCGGUCGUAGUuc -5' |
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26451 | 5' | -54.3 | NC_005357.1 | + | 28670 | 0.7 | 0.439826 |
Target: 5'- gCCGGCGgccucgccaGCGCGGCGcGCCA-CGUCGu- -3' miRNA: 3'- -GGCCGU---------UGCGUUGC-CGGUcGUAGUuc -5' |
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26451 | 5' | -54.3 | NC_005357.1 | + | 28590 | 0.67 | 0.623437 |
Target: 5'- aCCGGCAGCGUGGuguCGGUCAGUu----- -3' miRNA: 3'- -GGCCGUUGCGUU---GCCGGUCGuaguuc -5' |
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26451 | 5' | -54.3 | NC_005357.1 | + | 28403 | 0.76 | 0.211701 |
Target: 5'- gCCGGCGGCGCGGCG-CCAGUAg---- -3' miRNA: 3'- -GGCCGUUGCGUUGCcGGUCGUaguuc -5' |
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26451 | 5' | -54.3 | NC_005357.1 | + | 28133 | 0.68 | 0.556183 |
Target: 5'- uUCaGCAACGaCGugGGCC-GCAUCGc- -3' miRNA: 3'- -GGcCGUUGC-GUugCCGGuCGUAGUuc -5' |
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26451 | 5' | -54.3 | NC_005357.1 | + | 27726 | 0.66 | 0.668556 |
Target: 5'- -gGGCAuggagGCGCAACugcaGGCCgGGCuUCAAGc -3' miRNA: 3'- ggCCGU-----UGCGUUG----CCGG-UCGuAGUUC- -5' |
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26451 | 5' | -54.3 | NC_005357.1 | + | 27501 | 0.68 | 0.545147 |
Target: 5'- gCCGGCGGCcuCGGCcGCCAGCuucucggcgcgGUCGGGg -3' miRNA: 3'- -GGCCGUUGc-GUUGcCGGUCG-----------UAGUUC- -5' |
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26451 | 5' | -54.3 | NC_005357.1 | + | 27501 | 0.66 | 0.665183 |
Target: 5'- -gGGC-GCGCAGucggcacuugaggcCGGCCAGCAgCAGa -3' miRNA: 3'- ggCCGuUGCGUU--------------GCCGGUCGUaGUUc -5' |
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26451 | 5' | -54.3 | NC_005357.1 | + | 27469 | 0.68 | 0.589642 |
Target: 5'- aCCGGCGACuuCAAC-GCgAGCAUCGc- -3' miRNA: 3'- -GGCCGUUGc-GUUGcCGgUCGUAGUuc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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