Results 41 - 60 of 182 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26451 | 5' | -54.3 | NC_005357.1 | + | 10696 | 0.71 | 0.391667 |
Target: 5'- aCGGCAGCGCGcACGGCCucGGCc----- -3' miRNA: 3'- gGCCGUUGCGU-UGCCGG--UCGuaguuc -5' |
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26451 | 5' | -54.3 | NC_005357.1 | + | 20179 | 0.71 | 0.391667 |
Target: 5'- gCCGGCGaauACGCcaucGCGGCCGacaaccagggccGCGUCAAu -3' miRNA: 3'- -GGCCGU---UGCGu---UGCCGGU------------CGUAGUUc -5' |
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26451 | 5' | -54.3 | NC_005357.1 | + | 19032 | 0.71 | 0.391667 |
Target: 5'- gCGGUAGCccugGUAGCGGCCgccggcGGCGUCGAu -3' miRNA: 3'- gGCCGUUG----CGUUGCCGG------UCGUAGUUc -5' |
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26451 | 5' | -54.3 | NC_005357.1 | + | 12014 | 0.71 | 0.391667 |
Target: 5'- gCCaGCAGCGCGGCcguGGCCGGCGa---- -3' miRNA: 3'- -GGcCGUUGCGUUG---CCGGUCGUaguuc -5' |
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26451 | 5' | -54.3 | NC_005357.1 | + | 37471 | 0.71 | 0.391667 |
Target: 5'- aCCaGCAGCGCGauacGCGGCU-GCAUCGu- -3' miRNA: 3'- -GGcCGUUGCGU----UGCCGGuCGUAGUuc -5' |
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26451 | 5' | -54.3 | NC_005357.1 | + | 13778 | 0.71 | 0.395392 |
Target: 5'- gCCGGCAccgaucuggcacugcGCGCGGaacUGGCCGGCcUCAu- -3' miRNA: 3'- -GGCCGU---------------UGCGUU---GCCGGUCGuAGUuc -5' |
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26451 | 5' | -54.3 | NC_005357.1 | + | 41642 | 0.71 | 0.401023 |
Target: 5'- aCGGCGauuGCGCAGCGGCCcgaucugaccGGCAa---- -3' miRNA: 3'- gGCCGU---UGCGUUGCCGG----------UCGUaguuc -5' |
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26451 | 5' | -54.3 | NC_005357.1 | + | 14030 | 0.71 | 0.401023 |
Target: 5'- aCUGGCGcCGC-GCcGCCGGCGUCGAa -3' miRNA: 3'- -GGCCGUuGCGuUGcCGGUCGUAGUUc -5' |
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26451 | 5' | -54.3 | NC_005357.1 | + | 37792 | 0.71 | 0.410519 |
Target: 5'- aUGGcCGACGCAGCguGGcCCAGCAUCc-- -3' miRNA: 3'- gGCC-GUUGCGUUG--CC-GGUCGUAGuuc -5' |
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26451 | 5' | -54.3 | NC_005357.1 | + | 7684 | 0.71 | 0.410519 |
Target: 5'- uUGGCGGCGaucuGCGGCCGGUAgcccUCGAa -3' miRNA: 3'- gGCCGUUGCgu--UGCCGGUCGU----AGUUc -5' |
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26451 | 5' | -54.3 | NC_005357.1 | + | 10910 | 0.71 | 0.417248 |
Target: 5'- aCGGCAACaCAGCGaggcccagcagcacGCCGGCggCAAGg -3' miRNA: 3'- gGCCGUUGcGUUGC--------------CGGUCGuaGUUC- -5' |
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26451 | 5' | -54.3 | NC_005357.1 | + | 33978 | 0.71 | 0.420153 |
Target: 5'- aCGGUucgaucuGCGCAAgGGCCaaAGCcUCAAGg -3' miRNA: 3'- gGCCGu------UGCGUUgCCGG--UCGuAGUUC- -5' |
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26451 | 5' | -54.3 | NC_005357.1 | + | 13293 | 0.71 | 0.420153 |
Target: 5'- gCCGauuGCAGCGCGccGgGGCCGGCGUUg-- -3' miRNA: 3'- -GGC---CGUUGCGU--UgCCGGUCGUAGuuc -5' |
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26451 | 5' | -54.3 | NC_005357.1 | + | 32844 | 0.71 | 0.420153 |
Target: 5'- aCGGCuuCGCcuggccgcaGACGGUCGGCGcCGAGa -3' miRNA: 3'- gGCCGuuGCG---------UUGCCGGUCGUaGUUC- -5' |
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26451 | 5' | -54.3 | NC_005357.1 | + | 13016 | 0.7 | 0.429923 |
Target: 5'- gCCGcGCAGCGCAguggcgACGGCCu-CGUCAu- -3' miRNA: 3'- -GGC-CGUUGCGU------UGCCGGucGUAGUuc -5' |
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26451 | 5' | -54.3 | NC_005357.1 | + | 4802 | 0.7 | 0.429923 |
Target: 5'- gCCGGCuGGCGCugcgggauuGCuGGCCGGCGaCAGGu -3' miRNA: 3'- -GGCCG-UUGCGu--------UG-CCGGUCGUaGUUC- -5' |
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26451 | 5' | -54.3 | NC_005357.1 | + | 37864 | 0.7 | 0.439826 |
Target: 5'- aCCGaGCAGCGCcuCGGCgacuuCGGCcUCAAGc -3' miRNA: 3'- -GGC-CGUUGCGuuGCCG-----GUCGuAGUUC- -5' |
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26451 | 5' | -54.3 | NC_005357.1 | + | 803 | 0.7 | 0.439826 |
Target: 5'- uCCGGCGACGCGccGCGcCCAGCccuugccgaacGUCGGc -3' miRNA: 3'- -GGCCGUUGCGU--UGCcGGUCG-----------UAGUUc -5' |
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26451 | 5' | -54.3 | NC_005357.1 | + | 28670 | 0.7 | 0.439826 |
Target: 5'- gCCGGCGgccucgccaGCGCGGCGcGCCA-CGUCGu- -3' miRNA: 3'- -GGCCGU---------UGCGUUGC-CGGUcGUAGUuc -5' |
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26451 | 5' | -54.3 | NC_005357.1 | + | 22956 | 0.7 | 0.439826 |
Target: 5'- aCCGGCAccugGCGCAagcugaacuAUGGCguGCAgccCGAGa -3' miRNA: 3'- -GGCCGU----UGCGU---------UGCCGguCGUa--GUUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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