miRNA display CGI


Results 41 - 60 of 182 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26451 5' -54.3 NC_005357.1 + 11189 0.67 0.657302
Target:  5'- cCCGGCu-CGUAGCugGGCCGcGCGcCGGGg -3'
miRNA:   3'- -GGCCGuuGCGUUG--CCGGU-CGUaGUUC- -5'
26451 5' -54.3 NC_005357.1 + 38411 0.67 0.657302
Target:  5'- gCGGCAugACGCuggUGGCCGGCG-CGu- -3'
miRNA:   3'- gGCCGU--UGCGuu-GCCGGUCGUaGUuc -5'
26451 5' -54.3 NC_005357.1 + 23707 0.67 0.646023
Target:  5'- gCCGGUAGCGCccaggucGCGGgCCAGUGccUCGGu -3'
miRNA:   3'- -GGCCGUUGCGu------UGCC-GGUCGU--AGUUc -5'
26451 5' -54.3 NC_005357.1 + 19388 0.67 0.623437
Target:  5'- -aGGCAcaACGCAGCGcGC-AGCAaCAAGc -3'
miRNA:   3'- ggCCGU--UGCGUUGC-CGgUCGUaGUUC- -5'
26451 5' -54.3 NC_005357.1 + 23106 0.67 0.623437
Target:  5'- aCGGCGGCGCccACGGCgaCAGCggUAAc -3'
miRNA:   3'- gGCCGUUGCGu-UGCCG--GUCGuaGUUc -5'
26451 5' -54.3 NC_005357.1 + 12122 0.67 0.61215
Target:  5'- aUCGGCAgguugGCGCGACGcGCCAcGCGc---- -3'
miRNA:   3'- -GGCCGU-----UGCGUUGC-CGGU-CGUaguuc -5'
26451 5' -54.3 NC_005357.1 + 9874 0.67 0.634731
Target:  5'- aCCGGC-GCGCugcuucuCGGCCAGgCgcguggcgauGUCGAGc -3'
miRNA:   3'- -GGCCGuUGCGuu-----GCCGGUC-G----------UAGUUC- -5'
26451 5' -54.3 NC_005357.1 + 33711 0.67 0.61215
Target:  5'- cCCGGCucaagguGCGCGAcauccgaccCGGCCAGUA-CAc- -3'
miRNA:   3'- -GGCCGu------UGCGUU---------GCCGGUCGUaGUuc -5'
26451 5' -54.3 NC_005357.1 + 35983 0.67 0.61215
Target:  5'- aCGGCGACGCcuucGCGGgCGGUgguGUCGc- -3'
miRNA:   3'- gGCCGUUGCGu---UGCCgGUCG---UAGUuc -5'
26451 5' -54.3 NC_005357.1 + 28920 0.67 0.623437
Target:  5'- aCGGCAAaccgcuuaccuCGCccaaggcGCGGUCGGCAUCGc- -3'
miRNA:   3'- gGCCGUU-----------GCGu------UGCCGGUCGUAGUuc -5'
26451 5' -54.3 NC_005357.1 + 37608 0.67 0.634731
Target:  5'- aCGGCGACcuguCGcCGGCCAGCAa---- -3'
miRNA:   3'- gGCCGUUGc---GUuGCCGGUCGUaguuc -5'
26451 5' -54.3 NC_005357.1 + 30826 0.67 0.646023
Target:  5'- gCUGGCAcugcuGCcCGGCGGCCAGCcggCGGc -3'
miRNA:   3'- -GGCCGU-----UGcGUUGCCGGUCGua-GUUc -5'
26451 5' -54.3 NC_005357.1 + 29320 0.67 0.646023
Target:  5'- gCCGGCAAccCGgAACGGCuCAagauugcgcGCGUgGAGg -3'
miRNA:   3'- -GGCCGUU--GCgUUGCCG-GU---------CGUAgUUC- -5'
26451 5' -54.3 NC_005357.1 + 28590 0.67 0.623437
Target:  5'- aCCGGCAGCGUGGuguCGGUCAGUu----- -3'
miRNA:   3'- -GGCCGUUGCGUU---GCCGGUCGuaguuc -5'
26451 5' -54.3 NC_005357.1 + 41143 0.67 0.646023
Target:  5'- gCGGCG--GUGugGGCgGGCAUCAc- -3'
miRNA:   3'- gGCCGUugCGUugCCGgUCGUAGUuc -5'
26451 5' -54.3 NC_005357.1 + 7724 0.67 0.600882
Target:  5'- aCuGCAGCGCAcgcucgGCGGCCGGCu----- -3'
miRNA:   3'- gGcCGUUGCGU------UGCCGGUCGuaguuc -5'
26451 5' -54.3 NC_005357.1 + 4830 0.67 0.608767
Target:  5'- gCCGGCGccgucgucgaauucACGgaaAGCGGCCAGCuucCAAu -3'
miRNA:   3'- -GGCCGU--------------UGCg--UUGCCGGUCGua-GUUc -5'
26451 5' -54.3 NC_005357.1 + 7452 0.67 0.61215
Target:  5'- uUCGGCcuucGCGCgAAUGGCCuuGCAcCAGGa -3'
miRNA:   3'- -GGCCGu---UGCG-UUGCCGGu-CGUaGUUC- -5'
26451 5' -54.3 NC_005357.1 + 3700 0.67 0.61215
Target:  5'- aCGGCGACGCGcugccccauGCGGC--GCAUCc-- -3'
miRNA:   3'- gGCCGUUGCGU---------UGCCGguCGUAGuuc -5'
26451 5' -54.3 NC_005357.1 + 38549 0.67 0.61215
Target:  5'- gCGGCGACgGCAgcGCGGCCuacAGCGaCGGc -3'
miRNA:   3'- gGCCGUUG-CGU--UGCCGG---UCGUaGUUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.