miRNA display CGI


Results 41 - 60 of 182 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26451 5' -54.3 NC_005357.1 + 9874 0.67 0.634731
Target:  5'- aCCGGC-GCGCugcuucuCGGCCAGgCgcguggcgauGUCGAGc -3'
miRNA:   3'- -GGCCGuUGCGuu-----GCCGGUC-G----------UAGUUC- -5'
26451 5' -54.3 NC_005357.1 + 9891 0.82 0.078006
Target:  5'- gCCGGCGGCaGCAuccUGGCCGGCAUCAc- -3'
miRNA:   3'- -GGCCGUUG-CGUu--GCCGGUCGUAGUuc -5'
26451 5' -54.3 NC_005357.1 + 10080 0.66 0.713094
Target:  5'- gCGGCGAcCGCAGCgaccuGGgCGGCgguuGUCGGGa -3'
miRNA:   3'- gGCCGUU-GCGUUG-----CCgGUCG----UAGUUC- -5'
26451 5' -54.3 NC_005357.1 + 10306 0.69 0.50179
Target:  5'- uUCGGgGGCgucgaggucgGCAGCGGCCagGGCGUUGAGc -3'
miRNA:   3'- -GGCCgUUG----------CGUUGCCGG--UCGUAGUUC- -5'
26451 5' -54.3 NC_005357.1 + 10696 0.71 0.391667
Target:  5'- aCGGCAGCGCGcACGGCCucGGCc----- -3'
miRNA:   3'- gGCCGUUGCGU-UGCCGG--UCGuaguuc -5'
26451 5' -54.3 NC_005357.1 + 10875 0.66 0.713094
Target:  5'- uUCGGuCGGCGCGAUGcGCgCGGCGUa--- -3'
miRNA:   3'- -GGCC-GUUGCGUUGC-CG-GUCGUAguuc -5'
26451 5' -54.3 NC_005357.1 + 10910 0.71 0.417248
Target:  5'- aCGGCAACaCAGCGaggcccagcagcacGCCGGCggCAAGg -3'
miRNA:   3'- gGCCGUUGcGUUGC--------------CGGUCGuaGUUC- -5'
26451 5' -54.3 NC_005357.1 + 11189 0.67 0.657302
Target:  5'- cCCGGCu-CGUAGCugGGCCGcGCGcCGGGg -3'
miRNA:   3'- -GGCCGuuGCGUUG--CCGGU-CGUaGUUC- -5'
26451 5' -54.3 NC_005357.1 + 11379 0.66 0.713094
Target:  5'- cCCGGCAccucggugGCGaccugAugGGCCAGgGUCu-- -3'
miRNA:   3'- -GGCCGU--------UGCg----UugCCGGUCgUAGuuc -5'
26451 5' -54.3 NC_005357.1 + 11403 0.66 0.702055
Target:  5'- cCCGcGCGAuUGCcuCGGCCGGCAa---- -3'
miRNA:   3'- -GGC-CGUU-GCGuuGCCGGUCGUaguuc -5'
26451 5' -54.3 NC_005357.1 + 11837 0.68 0.589642
Target:  5'- aCCGGCcGCGCcGCGGUUGGCcugggCGAa -3'
miRNA:   3'- -GGCCGuUGCGuUGCCGGUCGua---GUUc -5'
26451 5' -54.3 NC_005357.1 + 12014 0.71 0.391667
Target:  5'- gCCaGCAGCGCGGCcguGGCCGGCGa---- -3'
miRNA:   3'- -GGcCGUUGCGUUG---CCGGUCGUaguuc -5'
26451 5' -54.3 NC_005357.1 + 12122 0.67 0.61215
Target:  5'- aUCGGCAgguugGCGCGACGcGCCAcGCGc---- -3'
miRNA:   3'- -GGCCGU-----UGCGUUGC-CGGU-CGUaguuc -5'
26451 5' -54.3 NC_005357.1 + 12305 0.69 0.490127
Target:  5'- gCCGGCGGCGUGuucuggcGCGGCCu-CAUCGc- -3'
miRNA:   3'- -GGCCGUUGCGU-------UGCCGGucGUAGUuc -5'
26451 5' -54.3 NC_005357.1 + 12630 0.66 0.667432
Target:  5'- cUCGGCAuCGCuGCuGCCguccuuuGGCGUCGGGu -3'
miRNA:   3'- -GGCCGUuGCGuUGcCGG-------UCGUAGUUC- -5'
26451 5' -54.3 NC_005357.1 + 13016 0.7 0.429923
Target:  5'- gCCGcGCAGCGCAguggcgACGGCCu-CGUCAu- -3'
miRNA:   3'- -GGC-CGUUGCGU------UGCCGGucGUAGUuc -5'
26451 5' -54.3 NC_005357.1 + 13176 0.67 0.600882
Target:  5'- gUCGGCcGCGCugggcgcccuUGGCCGGCGUUg-- -3'
miRNA:   3'- -GGCCGuUGCGuu--------GCCGGUCGUAGuuc -5'
26451 5' -54.3 NC_005357.1 + 13293 0.71 0.420153
Target:  5'- gCCGauuGCAGCGCGccGgGGCCGGCGUUg-- -3'
miRNA:   3'- -GGC---CGUUGCGU--UgCCGGUCGUAGuuc -5'
26451 5' -54.3 NC_005357.1 + 13537 0.72 0.347078
Target:  5'- gUCGGCGACggccaGCAACuacGCCAGCAgCGAGg -3'
miRNA:   3'- -GGCCGUUG-----CGUUGc--CGGUCGUaGUUC- -5'
26451 5' -54.3 NC_005357.1 + 13604 0.67 0.634731
Target:  5'- uCCGGCcgcaacccGACGaCGGCGcGCUGGCugcUCAAGa -3'
miRNA:   3'- -GGCCG--------UUGC-GUUGC-CGGUCGu--AGUUC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.