miRNA display CGI


Results 21 - 40 of 182 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26451 5' -54.3 NC_005357.1 + 22936 0.66 0.713094
Target:  5'- aCGGUu-CGCAGCGGCCuGCc----- -3'
miRNA:   3'- gGCCGuuGCGUUGCCGGuCGuaguuc -5'
26451 5' -54.3 NC_005357.1 + 449 0.66 0.702055
Target:  5'- -gGGCuGCuGC-GCGGCCAGCuugCGGGc -3'
miRNA:   3'- ggCCGuUG-CGuUGCCGGUCGua-GUUC- -5'
26451 5' -54.3 NC_005357.1 + 23532 0.66 0.690945
Target:  5'- uCCaGGCGGCGCAcGCGGUCgauGGCcUCGGc -3'
miRNA:   3'- -GG-CCGUUGCGU-UGCCGG---UCGuAGUUc -5'
26451 5' -54.3 NC_005357.1 + 36841 0.66 0.679774
Target:  5'- -aGGCGgacaucgacACgGUGGCGGCCAGCGUUg-- -3'
miRNA:   3'- ggCCGU---------UG-CGUUGCCGGUCGUAGuuc -5'
26451 5' -54.3 NC_005357.1 + 10875 0.66 0.713094
Target:  5'- uUCGGuCGGCGCGAUGcGCgCGGCGUa--- -3'
miRNA:   3'- -GGCC-GUUGCGUUGC-CG-GUCGUAguuc -5'
26451 5' -54.3 NC_005357.1 + 11379 0.66 0.713094
Target:  5'- cCCGGCAccucggugGCGaccugAugGGCCAGgGUCu-- -3'
miRNA:   3'- -GGCCGU--------UGCg----UugCCGGUCgUAGuuc -5'
26451 5' -54.3 NC_005357.1 + 7321 0.66 0.702055
Target:  5'- aUGGUcugcgAACGCAGCaGCCgguuGGCGUCGAu -3'
miRNA:   3'- gGCCG-----UUGCGUUGcCGG----UCGUAGUUc -5'
26451 5' -54.3 NC_005357.1 + 16774 0.66 0.678654
Target:  5'- aCCGGCGACGUgaaGGCGauggucgccaguuGCCAGUugGUCGc- -3'
miRNA:   3'- -GGCCGUUGCG---UUGC-------------CGGUCG--UAGUuc -5'
26451 5' -54.3 NC_005357.1 + 41253 0.66 0.679774
Target:  5'- aCGGCAGCGCGauACGGCU-GUccuUCAc- -3'
miRNA:   3'- gGCCGUUGCGU--UGCCGGuCGu--AGUuc -5'
26451 5' -54.3 NC_005357.1 + 18471 0.66 0.713094
Target:  5'- gCCGGCGGCGU--CGGCCGauuCGUCc-- -3'
miRNA:   3'- -GGCCGUUGCGuuGCCGGUc--GUAGuuc -5'
26451 5' -54.3 NC_005357.1 + 23282 0.66 0.66968
Target:  5'- gUCGGCGuGCGCcacgaaugccuguuuGCGGCCGGCAcuggcCGGGa -3'
miRNA:   3'- -GGCCGU-UGCGu--------------UGCCGGUCGUa----GUUC- -5'
26451 5' -54.3 NC_005357.1 + 27501 0.66 0.665183
Target:  5'- -gGGC-GCGCAGucggcacuugaggcCGGCCAGCAgCAGa -3'
miRNA:   3'- ggCCGuUGCGUU--------------GCCGGUCGUaGUUc -5'
26451 5' -54.3 NC_005357.1 + 26901 0.66 0.713094
Target:  5'- gCCGGCAccgUGCAuauCGGCCuGCccAUCAc- -3'
miRNA:   3'- -GGCCGUu--GCGUu--GCCGGuCG--UAGUuc -5'
26451 5' -54.3 NC_005357.1 + 24323 0.66 0.68983
Target:  5'- aCCGGaCGGCGCGAaggcguccugguuCGcGCCGGCuUCGGc -3'
miRNA:   3'- -GGCC-GUUGCGUU-------------GC-CGGUCGuAGUUc -5'
26451 5' -54.3 NC_005357.1 + 41974 0.66 0.713094
Target:  5'- gCGGUggUGC-GCGGCgAGCAg-AAGg -3'
miRNA:   3'- gGCCGuuGCGuUGCCGgUCGUagUUC- -5'
26451 5' -54.3 NC_005357.1 + 30297 0.66 0.717487
Target:  5'- uCgGGUAGCGCcccuGCGaGCCGcuuugcguguacuucGCGUCGGGg -3'
miRNA:   3'- -GgCCGUUGCGu---UGC-CGGU---------------CGUAGUUC- -5'
26451 5' -54.3 NC_005357.1 + 21678 0.66 0.713094
Target:  5'- -aGcGCGGCGCAGCGccucuacggcGCCAGCAgCAu- -3'
miRNA:   3'- ggC-CGUUGCGUUGC----------CGGUCGUaGUuc -5'
26451 5' -54.3 NC_005357.1 + 38549 0.67 0.61215
Target:  5'- gCGGCGACgGCAgcGCGGCCuacAGCGaCGGc -3'
miRNA:   3'- gGCCGUUG-CGU--UGCCGG---UCGUaGUUc -5'
26451 5' -54.3 NC_005357.1 + 26854 0.67 0.646023
Target:  5'- gCgGGCGAauuggGUAAUGGUCGGCGgaagCAAGg -3'
miRNA:   3'- -GgCCGUUg----CGUUGCCGGUCGUa---GUUC- -5'
26451 5' -54.3 NC_005357.1 + 23707 0.67 0.646023
Target:  5'- gCCGGUAGCGCccaggucGCGGgCCAGUGccUCGGu -3'
miRNA:   3'- -GGCCGUUGCGu------UGCC-GGUCGU--AGUUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.