Results 21 - 40 of 182 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26451 | 5' | -54.3 | NC_005357.1 | + | 5273 | 0.66 | 0.679774 |
Target: 5'- aCCGuguugauguucGCGGCGUuguCGGCCacGGCGUCGAu -3' miRNA: 3'- -GGC-----------CGUUGCGuu-GCCGG--UCGUAGUUc -5' |
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26451 | 5' | -54.3 | NC_005357.1 | + | 994 | 0.66 | 0.679774 |
Target: 5'- cCUGGCggUGCcgUGGUucaccgCAGCGUCGAa -3' miRNA: 3'- -GGCCGuuGCGuuGCCG------GUCGUAGUUc -5' |
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26451 | 5' | -54.3 | NC_005357.1 | + | 41253 | 0.66 | 0.679774 |
Target: 5'- aCGGCAGCGCGauACGGCU-GUccuUCAc- -3' miRNA: 3'- gGCCGUUGCGU--UGCCGGuCGu--AGUuc -5' |
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26451 | 5' | -54.3 | NC_005357.1 | + | 18321 | 0.66 | 0.679774 |
Target: 5'- aCGGCAguagcgGCGCAGCuuGGUgGGCAUaGGGa -3' miRNA: 3'- gGCCGU------UGCGUUG--CCGgUCGUAgUUC- -5' |
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26451 | 5' | -54.3 | NC_005357.1 | + | 16440 | 0.66 | 0.679774 |
Target: 5'- gCCGGCGGCGUugaacACGGCgucgUAG-AUCGGGg -3' miRNA: 3'- -GGCCGUUGCGu----UGCCG----GUCgUAGUUC- -5' |
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26451 | 5' | -54.3 | NC_005357.1 | + | 36841 | 0.66 | 0.679774 |
Target: 5'- -aGGCGgacaucgacACgGUGGCGGCCAGCGUUg-- -3' miRNA: 3'- ggCCGU---------UG-CGUUGCCGGUCGUAGuuc -5' |
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26451 | 5' | -54.3 | NC_005357.1 | + | 16774 | 0.66 | 0.678654 |
Target: 5'- aCCGGCGACGUgaaGGCGauggucgccaguuGCCAGUugGUCGc- -3' miRNA: 3'- -GGCCGUUGCG---UUGC-------------CGGUCG--UAGUuc -5' |
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26451 | 5' | -54.3 | NC_005357.1 | + | 23282 | 0.66 | 0.66968 |
Target: 5'- gUCGGCGuGCGCcacgaaugccuguuuGCGGCCGGCAcuggcCGGGa -3' miRNA: 3'- -GGCCGU-UGCGu--------------UGCCGGUCGUa----GUUC- -5' |
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26451 | 5' | -54.3 | NC_005357.1 | + | 7199 | 0.66 | 0.668556 |
Target: 5'- gCCGGgaCAGCGCGauguccACGGC-AGCAUCu-- -3' miRNA: 3'- -GGCC--GUUGCGU------UGCCGgUCGUAGuuc -5' |
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26451 | 5' | -54.3 | NC_005357.1 | + | 35248 | 0.66 | 0.668556 |
Target: 5'- cCCGGCuGCGuCAGgGcGUCAGCgcGUCGGGc -3' miRNA: 3'- -GGCCGuUGC-GUUgC-CGGUCG--UAGUUC- -5' |
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26451 | 5' | -54.3 | NC_005357.1 | + | 35092 | 0.66 | 0.668556 |
Target: 5'- -aGGCcGCGCucaaGGCCAuGCGucUCAAGg -3' miRNA: 3'- ggCCGuUGCGuug-CCGGU-CGU--AGUUC- -5' |
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26451 | 5' | -54.3 | NC_005357.1 | + | 8737 | 0.66 | 0.668556 |
Target: 5'- cCCGGCgGGCGCGGCG-CUAcCGUCAAc -3' miRNA: 3'- -GGCCG-UUGCGUUGCcGGUcGUAGUUc -5' |
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26451 | 5' | -54.3 | NC_005357.1 | + | 27726 | 0.66 | 0.668556 |
Target: 5'- -gGGCAuggagGCGCAACugcaGGCCgGGCuUCAAGc -3' miRNA: 3'- ggCCGU-----UGCGUUG----CCGG-UCGuAGUUC- -5' |
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26451 | 5' | -54.3 | NC_005357.1 | + | 14599 | 0.66 | 0.668556 |
Target: 5'- gCGGcCGGCGCcaccGCGGgCAGCGcgcgCGAGg -3' miRNA: 3'- gGCC-GUUGCGu---UGCCgGUCGUa---GUUC- -5' |
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26451 | 5' | -54.3 | NC_005357.1 | + | 15948 | 0.66 | 0.667432 |
Target: 5'- gCGGCGccuuCGCGuaGGCCAGUccagaauGUCGAGa -3' miRNA: 3'- gGCCGUu---GCGUugCCGGUCG-------UAGUUC- -5' |
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26451 | 5' | -54.3 | NC_005357.1 | + | 12630 | 0.66 | 0.667432 |
Target: 5'- cUCGGCAuCGCuGCuGCCguccuuuGGCGUCGGGu -3' miRNA: 3'- -GGCCGUuGCGuUGcCGG-------UCGUAGUUC- -5' |
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26451 | 5' | -54.3 | NC_005357.1 | + | 27501 | 0.66 | 0.665183 |
Target: 5'- -gGGC-GCGCAGucggcacuugaggcCGGCCAGCAgCAGa -3' miRNA: 3'- ggCCGuUGCGUU--------------GCCGGUCGUaGUUc -5' |
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26451 | 5' | -54.3 | NC_005357.1 | + | 11189 | 0.67 | 0.657302 |
Target: 5'- cCCGGCu-CGUAGCugGGCCGcGCGcCGGGg -3' miRNA: 3'- -GGCCGuuGCGUUG--CCGGU-CGUaGUUC- -5' |
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26451 | 5' | -54.3 | NC_005357.1 | + | 38411 | 0.67 | 0.657302 |
Target: 5'- gCGGCAugACGCuggUGGCCGGCG-CGu- -3' miRNA: 3'- gGCCGU--UGCGuu-GCCGGUCGUaGUuc -5' |
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26451 | 5' | -54.3 | NC_005357.1 | + | 7426 | 0.67 | 0.657302 |
Target: 5'- aCCGG-AugGC--CGGCCAGCAguUCGGc -3' miRNA: 3'- -GGCCgUugCGuuGCCGGUCGU--AGUUc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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