miRNA display CGI


Results 21 - 40 of 182 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26451 5' -54.3 NC_005357.1 + 38080 1.12 0.000544
Target:  5'- aCCGGCAACGCAACGGCCAGCAUCAAGg -3'
miRNA:   3'- -GGCCGUUGCGUUGCCGGUCGUAGUUC- -5'
26451 5' -54.3 NC_005357.1 + 30146 0.7 0.449857
Target:  5'- gCCGGC-ACGCug-GGCCAGCAacccgccCAGGa -3'
miRNA:   3'- -GGCCGuUGCGuugCCGGUCGUa------GUUC- -5'
26451 5' -54.3 NC_005357.1 + 29248 0.7 0.448848
Target:  5'- gCCGGCcaagggcgcccAGCGCGGCcgacacuGGCCGaCAUCGAGg -3'
miRNA:   3'- -GGCCG-----------UUGCGUUG-------CCGGUcGUAGUUC- -5'
26451 5' -54.3 NC_005357.1 + 17112 0.71 0.382456
Target:  5'- cCCGGCGACG-AGC-GCCGGUggCAGGg -3'
miRNA:   3'- -GGCCGUUGCgUUGcCGGUCGuaGUUC- -5'
26451 5' -54.3 NC_005357.1 + 4641 0.74 0.276295
Target:  5'- -gGGCcACGCugcguCGGCCAucGCGUCAAGg -3'
miRNA:   3'- ggCCGuUGCGuu---GCCGGU--CGUAGUUC- -5'
26451 5' -54.3 NC_005357.1 + 20104 0.69 0.491182
Target:  5'- cUCGGC-GCGUucggcACGGCCAGCAgCAu- -3'
miRNA:   3'- -GGCCGuUGCGu----UGCCGGUCGUaGUuc -5'
26451 5' -54.3 NC_005357.1 + 14722 0.7 0.467193
Target:  5'- aCCGGCGgcgagccgcugccgGCGC-GCGGCCuGUAUucCAAGa -3'
miRNA:   3'- -GGCCGU--------------UGCGuUGCCGGuCGUA--GUUC- -5'
26451 5' -54.3 NC_005357.1 + 4048 0.75 0.217527
Target:  5'- gCGGCGA-GCGGCaGGCCAGCGgccCAGGg -3'
miRNA:   3'- gGCCGUUgCGUUG-CCGGUCGUa--GUUC- -5'
26451 5' -54.3 NC_005357.1 + 13778 0.71 0.395392
Target:  5'- gCCGGCAccgaucuggcacugcGCGCGGaacUGGCCGGCcUCAu- -3'
miRNA:   3'- -GGCCGU---------------UGCGUU---GCCGGUCGuAGUuc -5'
26451 5' -54.3 NC_005357.1 + 19606 0.71 0.39074
Target:  5'- gUCGGCAGCGCGGCgaagucgGGCCAGUccggCAc- -3'
miRNA:   3'- -GGCCGUUGCGUUG-------CCGGUCGua--GUuc -5'
26451 5' -54.3 NC_005357.1 + 34040 0.76 0.206011
Target:  5'- aCUGGCuACGCAGCcagcgcgaGGCCGGguUCGAGc -3'
miRNA:   3'- -GGCCGuUGCGUUG--------CCGGUCguAGUUC- -5'
26451 5' -54.3 NC_005357.1 + 13858 0.76 0.194491
Target:  5'- gCCGGUGGCcgacgugcgcgccGCGAUGGCCGGCGgccgCAAGg -3'
miRNA:   3'- -GGCCGUUG-------------CGUUGCCGGUCGUa---GUUC- -5'
26451 5' -54.3 NC_005357.1 + 14947 0.69 0.512496
Target:  5'- gCCGGCAuccucgcgugguGCGUGGCGGCgcgcuggcauacCAGCGcCAGGg -3'
miRNA:   3'- -GGCCGU------------UGCGUUGCCG------------GUCGUaGUUC- -5'
26451 5' -54.3 NC_005357.1 + 8874 0.69 0.50179
Target:  5'- gCGGUAGCGUu-CGGCCuuGGCGUCc-- -3'
miRNA:   3'- gGCCGUUGCGuuGCCGG--UCGUAGuuc -5'
26451 5' -54.3 NC_005357.1 + 22956 0.7 0.439826
Target:  5'- aCCGGCAccugGCGCAagcugaacuAUGGCguGCAgccCGAGa -3'
miRNA:   3'- -GGCCGU----UGCGU---------UGCCGguCGUa--GUUC- -5'
26451 5' -54.3 NC_005357.1 + 26362 0.73 0.314103
Target:  5'- aCGGCGccgcGCGCGGCGGCCAcguGCG-CGAa -3'
miRNA:   3'- gGCCGU----UGCGUUGCCGGU---CGUaGUUc -5'
26451 5' -54.3 NC_005357.1 + 24150 0.73 0.290965
Target:  5'- aCCGGCc-CGCuGACGGCCGGCAa---- -3'
miRNA:   3'- -GGCCGuuGCG-UUGCCGGUCGUaguuc -5'
26451 5' -54.3 NC_005357.1 + 18976 0.78 0.15564
Target:  5'- gCCGGCGuguacGCGCGAaccauccgcauccCGGCCGGCGUCGc- -3'
miRNA:   3'- -GGCCGU-----UGCGUU-------------GCCGGUCGUAGUuc -5'
26451 5' -54.3 NC_005357.1 + 17635 0.71 0.382456
Target:  5'- aCGGCGACuuCAAC-GCgGGCAUCGAGg -3'
miRNA:   3'- gGCCGUUGc-GUUGcCGgUCGUAGUUC- -5'
26451 5' -54.3 NC_005357.1 + 14030 0.71 0.401023
Target:  5'- aCUGGCGcCGC-GCcGCCGGCGUCGAa -3'
miRNA:   3'- -GGCCGUuGCGuUGcCGGUCGUAGUUc -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.