miRNA display CGI


Results 21 - 40 of 182 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26451 5' -54.3 NC_005357.1 + 19606 0.71 0.39074
Target:  5'- gUCGGCAGCGCGGCgaagucgGGCCAGUccggCAc- -3'
miRNA:   3'- -GGCCGUUGCGUUG-------CCGGUCGua--GUuc -5'
26451 5' -54.3 NC_005357.1 + 38158 0.72 0.355699
Target:  5'- aCGGCcaucaccaugccGGCGCuGACGGCCGGCAcCGAc -3'
miRNA:   3'- gGCCG------------UUGCG-UUGCCGGUCGUaGUUc -5'
26451 5' -54.3 NC_005357.1 + 2835 0.75 0.235829
Target:  5'- gCGGCcacGCGCAGCGgcGCCAGCAccagCGAGg -3'
miRNA:   3'- gGCCGu--UGCGUUGC--CGGUCGUa---GUUC- -5'
26451 5' -54.3 NC_005357.1 + 42241 0.78 0.143383
Target:  5'- cCCGGCAGCGUGACGGugcCCAGCGacacCGGGg -3'
miRNA:   3'- -GGCCGUUGCGUUGCC---GGUCGUa---GUUC- -5'
26451 5' -54.3 NC_005357.1 + 30864 0.69 0.48068
Target:  5'- gCGGCAugGCuucgaugaccGGCGGgCAGUccuAUCAGGa -3'
miRNA:   3'- gGCCGUugCG----------UUGCCgGUCG---UAGUUC- -5'
26451 5' -54.3 NC_005357.1 + 33978 0.71 0.420153
Target:  5'- aCGGUucgaucuGCGCAAgGGCCaaAGCcUCAAGg -3'
miRNA:   3'- gGCCGu------UGCGUUgCCGG--UCGuAGUUC- -5'
26451 5' -54.3 NC_005357.1 + 13537 0.72 0.347078
Target:  5'- gUCGGCGACggccaGCAACuacGCCAGCAgCGAGg -3'
miRNA:   3'- -GGCCGUUG-----CGUUGc--CGGUCGUaGUUC- -5'
26451 5' -54.3 NC_005357.1 + 9891 0.82 0.078006
Target:  5'- gCCGGCGGCaGCAuccUGGCCGGCAUCAc- -3'
miRNA:   3'- -GGCCGUUG-CGUu--GCCGGUCGUAGUuc -5'
26451 5' -54.3 NC_005357.1 + 10910 0.71 0.417248
Target:  5'- aCGGCAACaCAGCGaggcccagcagcacGCCGGCggCAAGg -3'
miRNA:   3'- gGCCGUUGcGUUGC--------------CGGUCGuaGUUC- -5'
26451 5' -54.3 NC_005357.1 + 21091 0.85 0.047047
Target:  5'- uUGGCAaccuggGCGCggUGGCCGGCAUCAAGc -3'
miRNA:   3'- gGCCGU------UGCGuuGCCGGUCGUAGUUC- -5'
26451 5' -54.3 NC_005357.1 + 31900 0.72 0.355699
Target:  5'- gUGGCGGCGgaaagcguggcCGGCGGUCAGCAguucgUCAAGa -3'
miRNA:   3'- gGCCGUUGC-----------GUUGCCGGUCGU-----AGUUC- -5'
26451 5' -54.3 NC_005357.1 + 20179 0.71 0.391667
Target:  5'- gCCGGCGaauACGCcaucGCGGCCGacaaccagggccGCGUCAAu -3'
miRNA:   3'- -GGCCGU---UGCGu---UGCCGGU------------CGUAGUUc -5'
26451 5' -54.3 NC_005357.1 + 5267 0.73 0.298527
Target:  5'- gUCGGCAAUGCGuCGuuCCAGCGUCGAu -3'
miRNA:   3'- -GGCCGUUGCGUuGCc-GGUCGUAGUUc -5'
26451 5' -54.3 NC_005357.1 + 5232 0.74 0.269184
Target:  5'- cCCaGCAguucGCGCAGuuCGGCCGGCAggUCGGGg -3'
miRNA:   3'- -GGcCGU----UGCGUU--GCCGGUCGU--AGUUC- -5'
26451 5' -54.3 NC_005357.1 + 29866 0.76 0.211701
Target:  5'- gCCGcGCAGCGCGA-GGCCGGCAagAAa -3'
miRNA:   3'- -GGC-CGUUGCGUUgCCGGUCGUagUUc -5'
26451 5' -54.3 NC_005357.1 + 18976 0.78 0.15564
Target:  5'- gCCGGCGuguacGCGCGAaccauccgcauccCGGCCGGCGUCGc- -3'
miRNA:   3'- -GGCCGU-----UGCGUU-------------GCCGGUCGUAGUuc -5'
26451 5' -54.3 NC_005357.1 + 10306 0.69 0.50179
Target:  5'- uUCGGgGGCgucgaggucgGCAGCGGCCagGGCGUUGAGc -3'
miRNA:   3'- -GGCCgUUG----------CGUUGCCGG--UCGUAGUUC- -5'
26451 5' -54.3 NC_005357.1 + 12305 0.69 0.490127
Target:  5'- gCCGGCGGCGUGuucuggcGCGGCCu-CAUCGc- -3'
miRNA:   3'- -GGCCGUUGCGU-------UGCCGGucGUAGUuc -5'
26451 5' -54.3 NC_005357.1 + 37808 0.7 0.467193
Target:  5'- gCGGCAGCGCGGgccaacauUGGCCuggcugaccugggcGGCAUCGc- -3'
miRNA:   3'- gGCCGUUGCGUU--------GCCGG--------------UCGUAGUuc -5'
26451 5' -54.3 NC_005357.1 + 22956 0.7 0.439826
Target:  5'- aCCGGCAccugGCGCAagcugaacuAUGGCguGCAgccCGAGa -3'
miRNA:   3'- -GGCCGU----UGCGU---------UGCCGguCGUa--GUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.