Results 21 - 40 of 182 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26451 | 5' | -54.3 | NC_005357.1 | + | 38080 | 1.12 | 0.000544 |
Target: 5'- aCCGGCAACGCAACGGCCAGCAUCAAGg -3' miRNA: 3'- -GGCCGUUGCGUUGCCGGUCGUAGUUC- -5' |
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26451 | 5' | -54.3 | NC_005357.1 | + | 30146 | 0.7 | 0.449857 |
Target: 5'- gCCGGC-ACGCug-GGCCAGCAacccgccCAGGa -3' miRNA: 3'- -GGCCGuUGCGuugCCGGUCGUa------GUUC- -5' |
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26451 | 5' | -54.3 | NC_005357.1 | + | 29248 | 0.7 | 0.448848 |
Target: 5'- gCCGGCcaagggcgcccAGCGCGGCcgacacuGGCCGaCAUCGAGg -3' miRNA: 3'- -GGCCG-----------UUGCGUUG-------CCGGUcGUAGUUC- -5' |
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26451 | 5' | -54.3 | NC_005357.1 | + | 17112 | 0.71 | 0.382456 |
Target: 5'- cCCGGCGACG-AGC-GCCGGUggCAGGg -3' miRNA: 3'- -GGCCGUUGCgUUGcCGGUCGuaGUUC- -5' |
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26451 | 5' | -54.3 | NC_005357.1 | + | 4641 | 0.74 | 0.276295 |
Target: 5'- -gGGCcACGCugcguCGGCCAucGCGUCAAGg -3' miRNA: 3'- ggCCGuUGCGuu---GCCGGU--CGUAGUUC- -5' |
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26451 | 5' | -54.3 | NC_005357.1 | + | 20104 | 0.69 | 0.491182 |
Target: 5'- cUCGGC-GCGUucggcACGGCCAGCAgCAu- -3' miRNA: 3'- -GGCCGuUGCGu----UGCCGGUCGUaGUuc -5' |
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26451 | 5' | -54.3 | NC_005357.1 | + | 14722 | 0.7 | 0.467193 |
Target: 5'- aCCGGCGgcgagccgcugccgGCGC-GCGGCCuGUAUucCAAGa -3' miRNA: 3'- -GGCCGU--------------UGCGuUGCCGGuCGUA--GUUC- -5' |
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26451 | 5' | -54.3 | NC_005357.1 | + | 4048 | 0.75 | 0.217527 |
Target: 5'- gCGGCGA-GCGGCaGGCCAGCGgccCAGGg -3' miRNA: 3'- gGCCGUUgCGUUG-CCGGUCGUa--GUUC- -5' |
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26451 | 5' | -54.3 | NC_005357.1 | + | 13778 | 0.71 | 0.395392 |
Target: 5'- gCCGGCAccgaucuggcacugcGCGCGGaacUGGCCGGCcUCAu- -3' miRNA: 3'- -GGCCGU---------------UGCGUU---GCCGGUCGuAGUuc -5' |
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26451 | 5' | -54.3 | NC_005357.1 | + | 19606 | 0.71 | 0.39074 |
Target: 5'- gUCGGCAGCGCGGCgaagucgGGCCAGUccggCAc- -3' miRNA: 3'- -GGCCGUUGCGUUG-------CCGGUCGua--GUuc -5' |
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26451 | 5' | -54.3 | NC_005357.1 | + | 34040 | 0.76 | 0.206011 |
Target: 5'- aCUGGCuACGCAGCcagcgcgaGGCCGGguUCGAGc -3' miRNA: 3'- -GGCCGuUGCGUUG--------CCGGUCguAGUUC- -5' |
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26451 | 5' | -54.3 | NC_005357.1 | + | 13858 | 0.76 | 0.194491 |
Target: 5'- gCCGGUGGCcgacgugcgcgccGCGAUGGCCGGCGgccgCAAGg -3' miRNA: 3'- -GGCCGUUG-------------CGUUGCCGGUCGUa---GUUC- -5' |
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26451 | 5' | -54.3 | NC_005357.1 | + | 14947 | 0.69 | 0.512496 |
Target: 5'- gCCGGCAuccucgcgugguGCGUGGCGGCgcgcuggcauacCAGCGcCAGGg -3' miRNA: 3'- -GGCCGU------------UGCGUUGCCG------------GUCGUaGUUC- -5' |
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26451 | 5' | -54.3 | NC_005357.1 | + | 8874 | 0.69 | 0.50179 |
Target: 5'- gCGGUAGCGUu-CGGCCuuGGCGUCc-- -3' miRNA: 3'- gGCCGUUGCGuuGCCGG--UCGUAGuuc -5' |
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26451 | 5' | -54.3 | NC_005357.1 | + | 22956 | 0.7 | 0.439826 |
Target: 5'- aCCGGCAccugGCGCAagcugaacuAUGGCguGCAgccCGAGa -3' miRNA: 3'- -GGCCGU----UGCGU---------UGCCGguCGUa--GUUC- -5' |
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26451 | 5' | -54.3 | NC_005357.1 | + | 26362 | 0.73 | 0.314103 |
Target: 5'- aCGGCGccgcGCGCGGCGGCCAcguGCG-CGAa -3' miRNA: 3'- gGCCGU----UGCGUUGCCGGU---CGUaGUUc -5' |
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26451 | 5' | -54.3 | NC_005357.1 | + | 24150 | 0.73 | 0.290965 |
Target: 5'- aCCGGCc-CGCuGACGGCCGGCAa---- -3' miRNA: 3'- -GGCCGuuGCG-UUGCCGGUCGUaguuc -5' |
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26451 | 5' | -54.3 | NC_005357.1 | + | 18976 | 0.78 | 0.15564 |
Target: 5'- gCCGGCGuguacGCGCGAaccauccgcauccCGGCCGGCGUCGc- -3' miRNA: 3'- -GGCCGU-----UGCGUU-------------GCCGGUCGUAGUuc -5' |
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26451 | 5' | -54.3 | NC_005357.1 | + | 17635 | 0.71 | 0.382456 |
Target: 5'- aCGGCGACuuCAAC-GCgGGCAUCGAGg -3' miRNA: 3'- gGCCGUUGc-GUUGcCGgUCGUAGUUC- -5' |
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26451 | 5' | -54.3 | NC_005357.1 | + | 14030 | 0.71 | 0.401023 |
Target: 5'- aCUGGCGcCGC-GCcGCCGGCGUCGAa -3' miRNA: 3'- -GGCCGUuGCGuUGcCGGUCGUAGUUc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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