miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26452 3' -65.2 NC_005357.1 + 14203 0.66 0.208895
Target:  5'- uCCGACCCgcgcGUGGUcgucGGCGU-GGCCGAc -3'
miRNA:   3'- cGGCUGGGa---CGCCG----UCGCGcCCGGUU- -5'
26452 3' -65.2 NC_005357.1 + 17635 0.66 0.20359
Target:  5'- uGCCGcAUCgUGCGGCAGUaC-GGCCAc -3'
miRNA:   3'- -CGGC-UGGgACGCCGUCGcGcCCGGUu -5'
26452 3' -65.2 NC_005357.1 + 36056 0.66 0.20359
Target:  5'- gGCCGACCUgGUGuaaccCAGCGCcccggccuucGGGCCGGg -3'
miRNA:   3'- -CGGCUGGGaCGCc----GUCGCG----------CCCGGUU- -5'
26452 3' -65.2 NC_005357.1 + 34317 0.66 0.20359
Target:  5'- cGCCGGCC--GC-GCGGUGCaGGGCCu- -3'
miRNA:   3'- -CGGCUGGgaCGcCGUCGCG-CCCGGuu -5'
26452 3' -65.2 NC_005357.1 + 38399 0.66 0.20359
Target:  5'- cGCuCGACCCgcGCGGCAuGaCGCugguGGCCGg -3'
miRNA:   3'- -CG-GCUGGGa-CGCCGU-C-GCGc---CCGGUu -5'
26452 3' -65.2 NC_005357.1 + 36045 0.66 0.203066
Target:  5'- gGCCGGCcggCCUGCGccugauuGCcGaCGUGGGCCGGu -3'
miRNA:   3'- -CGGCUG---GGACGC-------CGuC-GCGCCCGGUU- -5'
26452 3' -65.2 NC_005357.1 + 8852 0.66 0.203066
Target:  5'- cGCCGacguaGCCCaggacggUGCGGUAGCGUucGGCCu- -3'
miRNA:   3'- -CGGC-----UGGG-------ACGCCGUCGCGc-CCGGuu -5'
26452 3' -65.2 NC_005357.1 + 24234 0.66 0.200463
Target:  5'- gGCCGAUCUUcucgaugauguccucGCGGCuugccaccuugAGCGUGGcGCCGGa -3'
miRNA:   3'- -CGGCUGGGA---------------CGCCG-----------UCGCGCC-CGGUU- -5'
26452 3' -65.2 NC_005357.1 + 13312 0.66 0.193329
Target:  5'- gGCCGGCgUUGUaGGCGGCGUaGGCUu- -3'
miRNA:   3'- -CGGCUGgGACG-CCGUCGCGcCCGGuu -5'
26452 3' -65.2 NC_005357.1 + 37834 0.66 0.192827
Target:  5'- gGCUGACCUggGCGGCAuCGCauaacuaGGaGCCAAc -3'
miRNA:   3'- -CGGCUGGGa-CGCCGUcGCG-------CC-CGGUU- -5'
26452 3' -65.2 NC_005357.1 + 11379 0.66 0.18837
Target:  5'- cCCGGCaCCU-CGGUGGCGaccugauGGGCCAGg -3'
miRNA:   3'- cGGCUG-GGAcGCCGUCGCg------CCCGGUU- -5'
26452 3' -65.2 NC_005357.1 + 2446 0.66 0.18837
Target:  5'- cGCCGAaaCUGCGGCccaGGCGCucGCCu- -3'
miRNA:   3'- -CGGCUggGACGCCG---UCGCGccCGGuu -5'
26452 3' -65.2 NC_005357.1 + 9811 0.66 0.18837
Target:  5'- -gCGACCgCggcgucGCGGCccuuGaCGCGGGCCAGc -3'
miRNA:   3'- cgGCUGG-Ga-----CGCCGu---C-GCGCCCGGUU- -5'
26452 3' -65.2 NC_005357.1 + 14601 0.66 0.18837
Target:  5'- gGCCGGCgCCaccGCgGGCAGCGCGcGCgAGg -3'
miRNA:   3'- -CGGCUG-GGa--CG-CCGUCGCGCcCGgUU- -5'
26452 3' -65.2 NC_005357.1 + 25116 0.66 0.185448
Target:  5'- aGCCGGCCCauaugccggaauggaUGCGcGCc-CGCGGcGCCGg -3'
miRNA:   3'- -CGGCUGGG---------------ACGC-CGucGCGCC-CGGUu -5'
26452 3' -65.2 NC_005357.1 + 16902 0.67 0.180668
Target:  5'- cGCUG-CCg-GCGGCGGCaaaaccgaccucaucGCGGGCCu- -3'
miRNA:   3'- -CGGCuGGgaCGCCGUCG---------------CGCCCGGuu -5'
26452 3' -65.2 NC_005357.1 + 39489 0.67 0.178787
Target:  5'- -aCGugCCgcGCGacGCGGUGUGGGCCGg -3'
miRNA:   3'- cgGCugGGa-CGC--CGUCGCGCCCGGUu -5'
26452 3' -65.2 NC_005357.1 + 30414 0.67 0.17416
Target:  5'- cGCCGGCCa--CGGCcGCGCugcuGGCCGAc -3'
miRNA:   3'- -CGGCUGGgacGCCGuCGCGc---CCGGUU- -5'
26452 3' -65.2 NC_005357.1 + 8831 0.67 0.17416
Target:  5'- gGUCGGgCCaGCcGCAaCGCGGGCCAGc -3'
miRNA:   3'- -CGGCUgGGaCGcCGUcGCGCCCGGUU- -5'
26452 3' -65.2 NC_005357.1 + 41428 0.67 0.17416
Target:  5'- cCCGGCCa-GUGGCgcgGGCaGCGGGCUGAc -3'
miRNA:   3'- cGGCUGGgaCGCCG---UCG-CGCCCGGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.