miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26454 5' -50.4 NC_005357.1 + 21806 0.76 0.349531
Target:  5'- -uGGCGGACAccggCAGuUGCAGCGG-CGGg -3'
miRNA:   3'- guUCGCUUGUa---GUU-ACGUCGCCaGCC- -5'
26454 5' -50.4 NC_005357.1 + 25906 0.66 0.905179
Target:  5'- uCAGGCGggUuUCGAcuUGCAGCuugCGGu -3'
miRNA:   3'- -GUUCGCuuGuAGUU--ACGUCGccaGCC- -5'
26454 5' -50.4 NC_005357.1 + 24332 0.66 0.905179
Target:  5'- uCAGGCG-GCAgagCGAUGCccguGUuguuGGUCGGg -3'
miRNA:   3'- -GUUCGCuUGUa--GUUACGu---CG----CCAGCC- -5'
26454 5' -50.4 NC_005357.1 + 7327 0.66 0.897994
Target:  5'- --uGCGAACG-CA--GCAGCcGGUUGGc -3'
miRNA:   3'- guuCGCUUGUaGUuaCGUCG-CCAGCC- -5'
26454 5' -50.4 NC_005357.1 + 23416 0.66 0.897994
Target:  5'- uGAGCGcGCcgGUCAGUGCGacGCcGGcCGGg -3'
miRNA:   3'- gUUCGCuUG--UAGUUACGU--CG-CCaGCC- -5'
26454 5' -50.4 NC_005357.1 + 17758 0.66 0.874685
Target:  5'- cCAGGUGuGCAguUCGA-GCAGCGaGUCGc -3'
miRNA:   3'- -GUUCGCuUGU--AGUUaCGUCGC-CAGCc -5'
26454 5' -50.4 NC_005357.1 + 4523 0.67 0.848879
Target:  5'- --cGUGAACGUgGcGUGCugGGCGGUCGu -3'
miRNA:   3'- guuCGCUUGUAgU-UACG--UCGCCAGCc -5'
26454 5' -50.4 NC_005357.1 + 9516 0.67 0.848879
Target:  5'- -uGGCGAACAguggCAucAUGCuGCGGcccuguUCGGc -3'
miRNA:   3'- guUCGCUUGUa---GU--UACGuCGCC------AGCC- -5'
26454 5' -50.4 NC_005357.1 + 41960 0.67 0.839761
Target:  5'- -uGGCGAuuGUCGAaGCGGUGGUgcgCGGc -3'
miRNA:   3'- guUCGCUugUAGUUaCGUCGCCA---GCC- -5'
26454 5' -50.4 NC_005357.1 + 40155 0.67 0.830401
Target:  5'- -cAGCGAACccaucGUCAacGUGguGCGcGUCGa -3'
miRNA:   3'- guUCGCUUG-----UAGU--UACguCGC-CAGCc -5'
26454 5' -50.4 NC_005357.1 + 26031 0.68 0.82081
Target:  5'- -cGGCGAugGCAUCAAaGCccgcGCGG-CGGg -3'
miRNA:   3'- guUCGCU--UGUAGUUaCGu---CGCCaGCC- -5'
26454 5' -50.4 NC_005357.1 + 14752 0.68 0.80098
Target:  5'- --cGCGcAGCAUUGGcgcGCAGCGuGUCGGu -3'
miRNA:   3'- guuCGC-UUGUAGUUa--CGUCGC-CAGCC- -5'
26454 5' -50.4 NC_005357.1 + 34371 0.7 0.669212
Target:  5'- -cGGUGAACugaugGUCGA-GCAGCGGUUGa -3'
miRNA:   3'- guUCGCUUG-----UAGUUaCGUCGCCAGCc -5'
26454 5' -50.4 NC_005357.1 + 9323 0.73 0.509254
Target:  5'- -cGGCGcACGUCGGcGCGGCGGgCGGc -3'
miRNA:   3'- guUCGCuUGUAGUUaCGUCGCCaGCC- -5'
26454 5' -50.4 NC_005357.1 + 24699 0.76 0.376668
Target:  5'- cCAGGCuGucCAUCGGUGcCAGuCGGUCGGg -3'
miRNA:   3'- -GUUCG-CuuGUAGUUAC-GUC-GCCAGCC- -5'
26454 5' -50.4 NC_005357.1 + 39657 0.78 0.284145
Target:  5'- --uGCGcAACGUCGAggugucgGCAGUGGUCGGc -3'
miRNA:   3'- guuCGC-UUGUAGUUa------CGUCGCCAGCC- -5'
26454 5' -50.4 NC_005357.1 + 37339 1.1 0.001908
Target:  5'- cCAAGCGAACAUCAAUGCAGCGGUCGGc -3'
miRNA:   3'- -GUUCGCUUGUAGUUACGUCGCCAGCC- -5'
26454 5' -50.4 NC_005357.1 + 37399 0.83 0.145278
Target:  5'- cCAGGCGAAUAUCAAcGCAGUaGUCGGu -3'
miRNA:   3'- -GUUCGCUUGUAGUUaCGUCGcCAGCC- -5'
26454 5' -50.4 NC_005357.1 + 37365 0.82 0.163103
Target:  5'- gCAAuGcCGAcaACAUCAAUGCAGCGGUCGc -3'
miRNA:   3'- -GUU-C-GCU--UGUAGUUACGUCGCCAGCc -5'
26454 5' -50.4 NC_005357.1 + 36840 0.73 0.520304
Target:  5'- gAGGCGGACAUCGAcaCGGUGG-CGGc -3'
miRNA:   3'- gUUCGCUUGUAGUUacGUCGCCaGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.