Results 21 - 40 of 72 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26457 | 5' | -60.5 | NC_005357.1 | + | 8931 | 0.67 | 0.335338 |
Target: 5'- --aGCGGUGGCcgugccggauucGCCAGCGgUGGcCGUg -3' miRNA: 3'- cugUGCCACCGc-----------CGGUCGCaACC-GCG- -5' |
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26457 | 5' | -60.5 | NC_005357.1 | + | 12020 | 0.67 | 0.305896 |
Target: 5'- aGCGCGGccgUGGcCGGCgaggucuugccCAGCGUgucgaagucgaUGGCGCc -3' miRNA: 3'- cUGUGCC---ACC-GCCG-----------GUCGCA-----------ACCGCG- -5' |
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26457 | 5' | -60.5 | NC_005357.1 | + | 23713 | 0.67 | 0.298485 |
Target: 5'- aGCGCccaGGUcGCgGGCCAGUGccucggUGGCGCg -3' miRNA: 3'- cUGUG---CCAcCG-CCGGUCGCa-----ACCGCG- -5' |
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26457 | 5' | -60.5 | NC_005357.1 | + | 9002 | 0.67 | 0.335338 |
Target: 5'- --aGCGGUGGCcgugccgcgauaGCCAGCGgUGGcCGUg -3' miRNA: 3'- cugUGCCACCGc-----------CGGUCGCaACC-GCG- -5' |
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26457 | 5' | -60.5 | NC_005357.1 | + | 9098 | 0.67 | 0.335338 |
Target: 5'- --aGCGGUGGCcgugccgcgauaGCCAGCGgUGGcCGUg -3' miRNA: 3'- cugUGCCACCGc-----------CGGUCGCaACC-GCG- -5' |
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26457 | 5' | -60.5 | NC_005357.1 | + | 9146 | 0.67 | 0.335338 |
Target: 5'- --aGCGGUGGCcgugccgcgauaGCCAGCGgUGGcCGUg -3' miRNA: 3'- cugUGCCACCGc-----------CGGUCGCaACC-GCG- -5' |
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26457 | 5' | -60.5 | NC_005357.1 | + | 9194 | 0.67 | 0.335338 |
Target: 5'- --aGCGGUGGCcgugccgcgauaGCCAGCGgUGGcCGUg -3' miRNA: 3'- cugUGCCACCGc-----------CGGUCGCaACC-GCG- -5' |
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26457 | 5' | -60.5 | NC_005357.1 | + | 26619 | 0.67 | 0.305896 |
Target: 5'- uGCGCGGUGGUGGCCgAGgGUaacgaGGaccgGCu -3' miRNA: 3'- cUGUGCCACCGCCGG-UCgCAa----CCg---CG- -5' |
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26457 | 5' | -60.5 | NC_005357.1 | + | 9050 | 0.67 | 0.335338 |
Target: 5'- --aGCGGUGGCcgugccgcgauaGCCAGCGgUGGcCGUg -3' miRNA: 3'- cugUGCCACCGc-----------CGGUCGCaACC-GCG- -5' |
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26457 | 5' | -60.5 | NC_005357.1 | + | 27836 | 0.67 | 0.305896 |
Target: 5'- -cCGCGGUGGC-GCCGGCc---GCGCc -3' miRNA: 3'- cuGUGCCACCGcCGGUCGcaacCGCG- -5' |
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26457 | 5' | -60.5 | NC_005357.1 | + | 7055 | 0.67 | 0.328182 |
Target: 5'- cGCAUGGccucgGGCGG-CAGCGUcguuugaacaggcUGGCGg -3' miRNA: 3'- cUGUGCCa----CCGCCgGUCGCA-------------ACCGCg -5' |
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26457 | 5' | -60.5 | NC_005357.1 | + | 18524 | 0.68 | 0.291214 |
Target: 5'- cGGCAUGGaaGCcGCgGGCG-UGGCGCa -3' miRNA: 3'- -CUGUGCCacCGcCGgUCGCaACCGCG- -5' |
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26457 | 5' | -60.5 | NC_005357.1 | + | 14972 | 0.68 | 0.256283 |
Target: 5'- cGGCGCGcUGGCauaccagcgccagGGCCuGCGgccgccgGGCGCg -3' miRNA: 3'- -CUGUGCcACCG-------------CCGGuCGCaa-----CCGCG- -5' |
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26457 | 5' | -60.5 | NC_005357.1 | + | 10207 | 0.68 | 0.284082 |
Target: 5'- --uGCGGUGGUGGUgAGUucGgacaGGCGCg -3' miRNA: 3'- cugUGCCACCGCCGgUCG--Caa--CCGCG- -5' |
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26457 | 5' | -60.5 | NC_005357.1 | + | 4277 | 0.68 | 0.284082 |
Target: 5'- cGGCAUGGUGaUGGCC-GUGUcGGCGg -3' miRNA: 3'- -CUGUGCCACcGCCGGuCGCAaCCGCg -5' |
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26457 | 5' | -60.5 | NC_005357.1 | + | 1462 | 0.68 | 0.256933 |
Target: 5'- cGGCGCGGUcGGCGGCCuccuggcaGGCcgggguaucgcaGUgcuggucggacaUGGCGCc -3' miRNA: 3'- -CUGUGCCA-CCGCCGG--------UCG------------CA------------ACCGCG- -5' |
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26457 | 5' | -60.5 | NC_005357.1 | + | 18317 | 0.68 | 0.284082 |
Target: 5'- aGACACGGcaguaGCGGCgCAGC-UUGGUGg -3' miRNA: 3'- -CUGUGCCac---CGCCG-GUCGcAACCGCg -5' |
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26457 | 5' | -60.5 | NC_005357.1 | + | 446 | 0.68 | 0.284082 |
Target: 5'- -gUugGGcugcUGcGCGGCCAGCuugcgGGCGCu -3' miRNA: 3'- cuGugCC----AC-CGCCGGUCGcaa--CCGCG- -5' |
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26457 | 5' | -60.5 | NC_005357.1 | + | 13302 | 0.68 | 0.284082 |
Target: 5'- aGCGCGccGG-GGCCGGCGUUguaggcGGCGUa -3' miRNA: 3'- cUGUGCcaCCgCCGGUCGCAA------CCGCG- -5' |
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26457 | 5' | -60.5 | NC_005357.1 | + | 28662 | 0.68 | 0.284082 |
Target: 5'- aGAU-CGGUgccGGCGGCCucgccAGCGc-GGCGCg -3' miRNA: 3'- -CUGuGCCA---CCGCCGG-----UCGCaaCCGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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