miRNA display CGI


Results 1 - 20 of 72 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26457 5' -60.5 NC_005357.1 + 39499 0.66 0.378889
Target:  5'- cGACGCGGUGuG-GGCCGGCaugGGaauggGCa -3'
miRNA:   3'- -CUGUGCCAC-CgCCGGUCGcaaCCg----CG- -5'
26457 5' -60.5 NC_005357.1 + 3738 0.66 0.361698
Target:  5'- cACGcCGGUGGUGGgCA-CGUcGGUGCc -3'
miRNA:   3'- cUGU-GCCACCGCCgGUcGCAaCCGCG- -5'
26457 5' -60.5 NC_005357.1 + 28758 0.66 0.361698
Target:  5'- aGCGCGGUgcgcuucucGGCGcGCaCGGCGUc-GCGCu -3'
miRNA:   3'- cUGUGCCA---------CCGC-CG-GUCGCAacCGCG- -5'
26457 5' -60.5 NC_005357.1 + 34039 0.66 0.376276
Target:  5'- cGACACGuG-GGCGGCgauucucgaagauuCGagcGCGgcGGCGCa -3'
miRNA:   3'- -CUGUGC-CaCCGCCG--------------GU---CGCaaCCGCG- -5'
26457 5' -60.5 NC_005357.1 + 9303 0.66 0.378889
Target:  5'- uGACuuccuCGGcgaccUGGCGGCgCA-CGUcGGCGCg -3'
miRNA:   3'- -CUGu----GCC-----ACCGCCG-GUcGCAaCCGCG- -5'
26457 5' -60.5 NC_005357.1 + 27633 0.66 0.373675
Target:  5'- gGGC-CGGUGGuUGGUCGGCaugaaagcuacccagGUgGGCGCc -3'
miRNA:   3'- -CUGuGCCACC-GCCGGUCG---------------CAaCCGCG- -5'
26457 5' -60.5 NC_005357.1 + 30673 0.66 0.378889
Target:  5'- cGCugGGUguaGGCGGCgggaauuguCGGUGUugUGGCGg -3'
miRNA:   3'- cUGugCCA---CCGCCG---------GUCGCA--ACCGCg -5'
26457 5' -60.5 NC_005357.1 + 11407 0.66 0.388576
Target:  5'- -cCAgGGUcuugagcagcGGCGaGCCGGCGUgcaggucgccgauaaGGCGCg -3'
miRNA:   3'- cuGUgCCA----------CCGC-CGGUCGCAa--------------CCGCG- -5'
26457 5' -60.5 NC_005357.1 + 19199 0.66 0.378889
Target:  5'- aGGCGCGGUcGGUGGCCgaGGCcgaGGC-Cg -3'
miRNA:   3'- -CUGUGCCA-CCGCCGG--UCGcaaCCGcG- -5'
26457 5' -60.5 NC_005357.1 + 3573 0.66 0.35414
Target:  5'- gGGCugGGcguacaccgauccgcGGCcGCCAGUGUUGGcCGUg -3'
miRNA:   3'- -CUGugCCa--------------CCGcCGGUCGCAACC-GCG- -5'
26457 5' -60.5 NC_005357.1 + 27434 0.66 0.353308
Target:  5'- -cCGCGcccGGCGGCCgcaGGCccUGGCGCu -3'
miRNA:   3'- cuGUGCca-CCGCCGG---UCGcaACCGCG- -5'
26457 5' -60.5 NC_005357.1 + 21101 0.66 0.387688
Target:  5'- gGGCGCGGUGGcCGGCaucaAGCccgaaGUGCu -3'
miRNA:   3'- -CUGUGCCACC-GCCGg---UCGcaac-CGCG- -5'
26457 5' -60.5 NC_005357.1 + 28885 0.66 0.370225
Target:  5'- gGGCAcCGaGUcaGGCGGCCGacaGUUcGGCGCg -3'
miRNA:   3'- -CUGU-GC-CA--CCGCCGGUcg-CAA-CCGCG- -5'
26457 5' -60.5 NC_005357.1 + 41732 0.66 0.361698
Target:  5'- --gGCGGUaucuugGGCGGcCCGGCc--GGCGCc -3'
miRNA:   3'- cugUGCCA------CCGCC-GGUCGcaaCCGCG- -5'
26457 5' -60.5 NC_005357.1 + 38550 0.66 0.345056
Target:  5'- cGGCgACGGcagcGCGGCCuacAGCGacGGCGCc -3'
miRNA:   3'- -CUG-UGCCac--CGCCGG---UCGCaaCCGCG- -5'
26457 5' -60.5 NC_005357.1 + 38881 0.67 0.328972
Target:  5'- cGGCGCGGuUGGCGGgaCuGCGcgGuGUGCg -3'
miRNA:   3'- -CUGUGCC-ACCGCCg-GuCGCaaC-CGCG- -5'
26457 5' -60.5 NC_005357.1 + 1710 0.67 0.328972
Target:  5'- -cCGUGGgccGGCGuGCCGGCGagGGCGUc -3'
miRNA:   3'- cuGUGCCa--CCGC-CGGUCGCaaCCGCG- -5'
26457 5' -60.5 NC_005357.1 + 12020 0.67 0.305896
Target:  5'- aGCGCGGccgUGGcCGGCgaggucuugccCAGCGUgucgaagucgaUGGCGCc -3'
miRNA:   3'- cUGUGCC---ACC-GCCG-----------GUCGCA-----------ACCGCG- -5'
26457 5' -60.5 NC_005357.1 + 8663 0.67 0.321139
Target:  5'- cGCGCGGUcGGCauugcguGCCgcgcgcaccucGGCGUUGGUGUa -3'
miRNA:   3'- cUGUGCCA-CCGc------CGG-----------UCGCAACCGCG- -5'
26457 5' -60.5 NC_005357.1 + 26619 0.67 0.305896
Target:  5'- uGCGCGGUGGUGGCCgAGgGUaacgaGGaccgGCu -3'
miRNA:   3'- cUGUGCCACCGCCGG-UCgCAa----CCg---CG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.