miRNA display CGI


Results 1 - 20 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26457 5' -60.5 NC_005357.1 + 36851 1.1 0.00018
Target:  5'- cGACACGGUGGCGGCCAGCGUUGGCGCc -3'
miRNA:   3'- -CUGUGCCACCGCCGGUCGCAACCGCG- -5'
26457 5' -60.5 NC_005357.1 + 18395 0.8 0.037997
Target:  5'- uGGCGcCGGUGGCGGCCacgucGGCGaaggUGGCGUu -3'
miRNA:   3'- -CUGU-GCCACCGCCGG-----UCGCa---ACCGCG- -5'
26457 5' -60.5 NC_005357.1 + 12292 0.8 0.039113
Target:  5'- cGACGCGGU-GCaGGCCGGCGgcguguucUGGCGCg -3'
miRNA:   3'- -CUGUGCCAcCG-CCGGUCGCa-------ACCGCG- -5'
26457 5' -60.5 NC_005357.1 + 18675 0.75 0.087149
Target:  5'- cGGCcCGGUGGC-GCCGGCa-UGGCGCu -3'
miRNA:   3'- -CUGuGCCACCGcCGGUCGcaACCGCG- -5'
26457 5' -60.5 NC_005357.1 + 7731 0.74 0.103136
Target:  5'- cGCACGcucGGCGGCCGGCuugcuGUUGGCGa -3'
miRNA:   3'- cUGUGCca-CCGCCGGUCG-----CAACCGCg -5'
26457 5' -60.5 NC_005357.1 + 36896 0.74 0.106056
Target:  5'- cGACcuggGCGGaaccugGGCGGCCGGCGUgccuacgacuuUGGCaGCa -3'
miRNA:   3'- -CUG----UGCCa-----CCGCCGGUCGCA-----------ACCG-CG- -5'
26457 5' -60.5 NC_005357.1 + 14843 0.73 0.115288
Target:  5'- cGAUGCcGuUGGCGGCCAGCGccgcacgcugGGCGCc -3'
miRNA:   3'- -CUGUGcC-ACCGCCGGUCGCaa--------CCGCG- -5'
26457 5' -60.5 NC_005357.1 + 6403 0.73 0.118529
Target:  5'- cGGCcCGGUGuagucGCGGCCcauGuCGUUGGCGCc -3'
miRNA:   3'- -CUGuGCCAC-----CGCCGGu--C-GCAACCGCG- -5'
26457 5' -60.5 NC_005357.1 + 21584 0.73 0.121855
Target:  5'- cGGCcacuuCGGUGGCGGUCAucuGCGgauUGGUGCc -3'
miRNA:   3'- -CUGu----GCCACCGCCGGU---CGCa--ACCGCG- -5'
26457 5' -60.5 NC_005357.1 + 38408 0.73 0.132357
Target:  5'- cGCGCGGcaugacgcUGGUGGCCGGCGcguuuugGGCGg -3'
miRNA:   3'- cUGUGCC--------ACCGCCGGUCGCaa-----CCGCg -5'
26457 5' -60.5 NC_005357.1 + 37071 0.72 0.151729
Target:  5'- gGGCGCGGUgcaGGCGGCCAcGCa---GCGCg -3'
miRNA:   3'- -CUGUGCCA---CCGCCGGU-CGcaacCGCG- -5'
26457 5' -60.5 NC_005357.1 + 1754 0.71 0.160176
Target:  5'- --gGCGGUcauGGcCGGCCuGCGccUGGCGCg -3'
miRNA:   3'- cugUGCCA---CC-GCCGGuCGCa-ACCGCG- -5'
26457 5' -60.5 NC_005357.1 + 9000 0.71 0.164557
Target:  5'- cGCGCGGgGGCGcuuCCAGCaGgcGGCGCa -3'
miRNA:   3'- cUGUGCCaCCGCc--GGUCG-CaaCCGCG- -5'
26457 5' -60.5 NC_005357.1 + 21287 0.71 0.173642
Target:  5'- gGGCGCGGacacGGCGGCCAaGCug-GGCaGCg -3'
miRNA:   3'- -CUGUGCCa---CCGCCGGU-CGcaaCCG-CG- -5'
26457 5' -60.5 NC_005357.1 + 212 0.71 0.173642
Target:  5'- cGACACGGcgaacUGGCGcaccUCGGCaUUGGCGCg -3'
miRNA:   3'- -CUGUGCC-----ACCGCc---GGUCGcAACCGCG- -5'
26457 5' -60.5 NC_005357.1 + 16245 0.71 0.17835
Target:  5'- cGGCACGauaUGGCGGauGGCGUUGGCcucGCg -3'
miRNA:   3'- -CUGUGCc--ACCGCCggUCGCAACCG---CG- -5'
26457 5' -60.5 NC_005357.1 + 8557 0.71 0.183172
Target:  5'- cGCGCcGaUGGCGGgCAGCGacaGGCGCg -3'
miRNA:   3'- cUGUGcC-ACCGCCgGUCGCaa-CCGCG- -5'
26457 5' -60.5 NC_005357.1 + 22231 0.71 0.183172
Target:  5'- uGACGCGGcccUGGUugucGGCC-GCGaUGGCGUa -3'
miRNA:   3'- -CUGUGCC---ACCG----CCGGuCGCaACCGCG- -5'
26457 5' -60.5 NC_005357.1 + 29394 0.7 0.203624
Target:  5'- cGGCGCGGUa--GGCCAGCagaaucuugGGCGCg -3'
miRNA:   3'- -CUGUGCCAccgCCGGUCGcaa------CCGCG- -5'
26457 5' -60.5 NC_005357.1 + 7482 0.7 0.209038
Target:  5'- aGugGCGGUGGUauaGGCCccuugcaacuGGCGgcGcGCGCu -3'
miRNA:   3'- -CugUGCCACCG---CCGG----------UCGCaaC-CGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.