Results 21 - 40 of 72 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26457 | 5' | -60.5 | NC_005357.1 | + | 16581 | 0.7 | 0.209038 |
Target: 5'- cGACGCGccGGacgaGGCCgaccacgcgauGGUGUUGGCGCc -3' miRNA: 3'- -CUGUGCcaCCg---CCGG-----------UCGCAACCGCG- -5' |
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26457 | 5' | -60.5 | NC_005357.1 | + | 38836 | 0.7 | 0.214016 |
Target: 5'- uACACGGccaacacUGGCGGCC-GCGgaucGGUGUa -3' miRNA: 3'- cUGUGCC-------ACCGCCGGuCGCaa--CCGCG- -5' |
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26457 | 5' | -60.5 | NC_005357.1 | + | 5085 | 0.7 | 0.214016 |
Target: 5'- --uGCGGUuggaacaGGCGGCCggcccAGCGUccggugcggcUGGCGCc -3' miRNA: 3'- cugUGCCA-------CCGCCGG-----UCGCA----------ACCGCG- -5' |
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26457 | 5' | -60.5 | NC_005357.1 | + | 12740 | 0.7 | 0.214575 |
Target: 5'- uGCugGGUGccGCGcCCAGaCGcUUGGCGCg -3' miRNA: 3'- cUGugCCAC--CGCcGGUC-GC-AACCGCG- -5' |
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26457 | 5' | -60.5 | NC_005357.1 | + | 15539 | 0.69 | 0.220238 |
Target: 5'- uGCACGGUGcCGGCCuccaCGUccaggucaaUGGCGCc -3' miRNA: 3'- cUGUGCCACcGCCGGuc--GCA---------ACCGCG- -5' |
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26457 | 5' | -60.5 | NC_005357.1 | + | 21724 | 0.69 | 0.226028 |
Target: 5'- aACGCGGUacGGauGCCAcCGUUgGGCGCg -3' miRNA: 3'- cUGUGCCA--CCgcCGGUcGCAA-CCGCG- -5' |
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26457 | 5' | -60.5 | NC_005357.1 | + | 16890 | 0.69 | 0.244174 |
Target: 5'- cGGCuACGGgGGCGcuGCCGGCGgcGGCa- -3' miRNA: 3'- -CUG-UGCCaCCGC--CGGUCGCaaCCGcg -5' |
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26457 | 5' | -60.5 | NC_005357.1 | + | 24906 | 0.69 | 0.244174 |
Target: 5'- aACGCGGUGGCGcGCuauauCAGC-UUGGUGa -3' miRNA: 3'- cUGUGCCACCGC-CG-----GUCGcAACCGCg -5' |
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26457 | 5' | -60.5 | NC_005357.1 | + | 7422 | 0.69 | 0.250487 |
Target: 5'- gGGCAcCGGaUGGcCGGCCAGCaGUUcGGCu- -3' miRNA: 3'- -CUGU-GCC-ACC-GCCGGUCG-CAA-CCGcg -5' |
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26457 | 5' | -60.5 | NC_005357.1 | + | 8118 | 0.69 | 0.250487 |
Target: 5'- uGCACcgc-GCGGCCGGCGUUGGUuguggGCg -3' miRNA: 3'- cUGUGccacCGCCGGUCGCAACCG-----CG- -5' |
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26457 | 5' | -60.5 | NC_005357.1 | + | 14972 | 0.68 | 0.256283 |
Target: 5'- cGGCGCGcUGGCauaccagcgccagGGCCuGCGgccgccgGGCGCg -3' miRNA: 3'- -CUGUGCcACCG-------------CCGGuCGCaa-----CCGCG- -5' |
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26457 | 5' | -60.5 | NC_005357.1 | + | 1462 | 0.68 | 0.256933 |
Target: 5'- cGGCGCGGUcGGCGGCCuccuggcaGGCcgggguaucgcaGUgcuggucggacaUGGCGCc -3' miRNA: 3'- -CUGUGCCA-CCGCCGG--------UCG------------CA------------ACCGCG- -5' |
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26457 | 5' | -60.5 | NC_005357.1 | + | 31895 | 0.68 | 0.270233 |
Target: 5'- uGCGC-GUGGCGGCggaaAGCGUggccGGCGg -3' miRNA: 3'- cUGUGcCACCGCCGg---UCGCAa---CCGCg -5' |
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26457 | 5' | -60.5 | NC_005357.1 | + | 17753 | 0.68 | 0.277088 |
Target: 5'- gGGCGUGGacGUGGCCcGCGgcgGGCGCg -3' miRNA: 3'- -CUGUGCCacCGCCGGuCGCaa-CCGCG- -5' |
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26457 | 5' | -60.5 | NC_005357.1 | + | 18317 | 0.68 | 0.284082 |
Target: 5'- aGACACGGcaguaGCGGCgCAGC-UUGGUGg -3' miRNA: 3'- -CUGUGCCac---CGCCG-GUCGcAACCGCg -5' |
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26457 | 5' | -60.5 | NC_005357.1 | + | 446 | 0.68 | 0.284082 |
Target: 5'- -gUugGGcugcUGcGCGGCCAGCuugcgGGCGCu -3' miRNA: 3'- cuGugCC----AC-CGCCGGUCGcaa--CCGCG- -5' |
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26457 | 5' | -60.5 | NC_005357.1 | + | 13302 | 0.68 | 0.284082 |
Target: 5'- aGCGCGccGG-GGCCGGCGUUguaggcGGCGUa -3' miRNA: 3'- cUGUGCcaCCgCCGGUCGCAA------CCGCG- -5' |
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26457 | 5' | -60.5 | NC_005357.1 | + | 4277 | 0.68 | 0.284082 |
Target: 5'- cGGCAUGGUGaUGGCC-GUGUcGGCGg -3' miRNA: 3'- -CUGUGCCACcGCCGGuCGCAaCCGCg -5' |
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26457 | 5' | -60.5 | NC_005357.1 | + | 10207 | 0.68 | 0.284082 |
Target: 5'- --uGCGGUGGUGGUgAGUucGgacaGGCGCg -3' miRNA: 3'- cugUGCCACCGCCGgUCG--Caa--CCGCG- -5' |
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26457 | 5' | -60.5 | NC_005357.1 | + | 28662 | 0.68 | 0.284082 |
Target: 5'- aGAU-CGGUgccGGCGGCCucgccAGCGc-GGCGCg -3' miRNA: 3'- -CUGuGCCA---CCGCCGG-----UCGCaaCCGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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