miRNA display CGI


Results 21 - 40 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26457 5' -60.5 NC_005357.1 + 9146 0.67 0.335338
Target:  5'- --aGCGGUGGCcgugccgcgauaGCCAGCGgUGGcCGUg -3'
miRNA:   3'- cugUGCCACCGc-----------CGGUCGCaACC-GCG- -5'
26457 5' -60.5 NC_005357.1 + 17092 0.67 0.328972
Target:  5'- cGGCGCGGUucuCGGCCGgGCcUUGGgGCu -3'
miRNA:   3'- -CUGUGCCAcc-GCCGGU-CGcAACCgCG- -5'
26457 5' -60.5 NC_005357.1 + 1710 0.67 0.328972
Target:  5'- -cCGUGGgccGGCGuGCCGGCGagGGCGUc -3'
miRNA:   3'- cuGUGCCa--CCGC-CGGUCGCaaCCGCG- -5'
26457 5' -60.5 NC_005357.1 + 38881 0.67 0.328972
Target:  5'- cGGCGCGGuUGGCGGgaCuGCGcgGuGUGCg -3'
miRNA:   3'- -CUGUGCC-ACCGCCg-GuCGCaaC-CGCG- -5'
26457 5' -60.5 NC_005357.1 + 7055 0.67 0.328182
Target:  5'- cGCAUGGccucgGGCGG-CAGCGUcguuugaacaggcUGGCGg -3'
miRNA:   3'- cUGUGCCa----CCGCCgGUCGCA-------------ACCGCg -5'
26457 5' -60.5 NC_005357.1 + 8663 0.67 0.321139
Target:  5'- cGCGCGGUcGGCauugcguGCCgcgcgcaccucGGCGUUGGUGUa -3'
miRNA:   3'- cUGUGCCA-CCGc------CGG-----------UCGCAACCGCG- -5'
26457 5' -60.5 NC_005357.1 + 31096 0.67 0.305896
Target:  5'- cACcuCGGU-GCaGGCCGGCGagUGGUGCg -3'
miRNA:   3'- cUGu-GCCAcCG-CCGGUCGCa-ACCGCG- -5'
26457 5' -60.5 NC_005357.1 + 27836 0.67 0.305896
Target:  5'- -cCGCGGUGGC-GCCGGCc---GCGCc -3'
miRNA:   3'- cuGUGCCACCGcCGGUCGcaacCGCG- -5'
26457 5' -60.5 NC_005357.1 + 12020 0.67 0.305896
Target:  5'- aGCGCGGccgUGGcCGGCgaggucuugccCAGCGUgucgaagucgaUGGCGCc -3'
miRNA:   3'- cUGUGCC---ACC-GCCG-----------GUCGCA-----------ACCGCG- -5'
26457 5' -60.5 NC_005357.1 + 26619 0.67 0.305896
Target:  5'- uGCGCGGUGGUGGCCgAGgGUaacgaGGaccgGCu -3'
miRNA:   3'- cUGUGCCACCGCCGG-UCgCAa----CCg---CG- -5'
26457 5' -60.5 NC_005357.1 + 23713 0.67 0.298485
Target:  5'- aGCGCccaGGUcGCgGGCCAGUGccucggUGGCGCg -3'
miRNA:   3'- cUGUG---CCAcCG-CCGGUCGCa-----ACCGCG- -5'
26457 5' -60.5 NC_005357.1 + 18524 0.68 0.291214
Target:  5'- cGGCAUGGaaGCcGCgGGCG-UGGCGCa -3'
miRNA:   3'- -CUGUGCCacCGcCGgUCGCaACCGCG- -5'
26457 5' -60.5 NC_005357.1 + 10207 0.68 0.284082
Target:  5'- --uGCGGUGGUGGUgAGUucGgacaGGCGCg -3'
miRNA:   3'- cugUGCCACCGCCGgUCG--Caa--CCGCG- -5'
26457 5' -60.5 NC_005357.1 + 18317 0.68 0.284082
Target:  5'- aGACACGGcaguaGCGGCgCAGC-UUGGUGg -3'
miRNA:   3'- -CUGUGCCac---CGCCG-GUCGcAACCGCg -5'
26457 5' -60.5 NC_005357.1 + 446 0.68 0.284082
Target:  5'- -gUugGGcugcUGcGCGGCCAGCuugcgGGCGCu -3'
miRNA:   3'- cuGugCC----AC-CGCCGGUCGcaa--CCGCG- -5'
26457 5' -60.5 NC_005357.1 + 28662 0.68 0.284082
Target:  5'- aGAU-CGGUgccGGCGGCCucgccAGCGc-GGCGCg -3'
miRNA:   3'- -CUGuGCCA---CCGCCGG-----UCGCaaCCGCG- -5'
26457 5' -60.5 NC_005357.1 + 4277 0.68 0.284082
Target:  5'- cGGCAUGGUGaUGGCC-GUGUcGGCGg -3'
miRNA:   3'- -CUGUGCCACcGCCGGuCGCAaCCGCg -5'
26457 5' -60.5 NC_005357.1 + 13302 0.68 0.284082
Target:  5'- aGCGCGccGG-GGCCGGCGUUguaggcGGCGUa -3'
miRNA:   3'- cUGUGCcaCCgCCGGUCGCAA------CCGCG- -5'
26457 5' -60.5 NC_005357.1 + 17753 0.68 0.277088
Target:  5'- gGGCGUGGacGUGGCCcGCGgcgGGCGCg -3'
miRNA:   3'- -CUGUGCCacCGCCGGuCGCaa-CCGCG- -5'
26457 5' -60.5 NC_005357.1 + 31895 0.68 0.270233
Target:  5'- uGCGC-GUGGCGGCggaaAGCGUggccGGCGg -3'
miRNA:   3'- cUGUGcCACCGCCGg---UCGCAa---CCGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.