miRNA display CGI


Results 41 - 60 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26457 5' -60.5 NC_005357.1 + 1462 0.68 0.256933
Target:  5'- cGGCGCGGUcGGCGGCCuccuggcaGGCcgggguaucgcaGUgcuggucggacaUGGCGCc -3'
miRNA:   3'- -CUGUGCCA-CCGCCGG--------UCG------------CA------------ACCGCG- -5'
26457 5' -60.5 NC_005357.1 + 14972 0.68 0.256283
Target:  5'- cGGCGCGcUGGCauaccagcgccagGGCCuGCGgccgccgGGCGCg -3'
miRNA:   3'- -CUGUGCcACCG-------------CCGGuCGCaa-----CCGCG- -5'
26457 5' -60.5 NC_005357.1 + 7422 0.69 0.250487
Target:  5'- gGGCAcCGGaUGGcCGGCCAGCaGUUcGGCu- -3'
miRNA:   3'- -CUGU-GCC-ACC-GCCGGUCG-CAA-CCGcg -5'
26457 5' -60.5 NC_005357.1 + 8118 0.69 0.250487
Target:  5'- uGCACcgc-GCGGCCGGCGUUGGUuguggGCg -3'
miRNA:   3'- cUGUGccacCGCCGGUCGCAACCG-----CG- -5'
26457 5' -60.5 NC_005357.1 + 24906 0.69 0.244174
Target:  5'- aACGCGGUGGCGcGCuauauCAGC-UUGGUGa -3'
miRNA:   3'- cUGUGCCACCGC-CG-----GUCGcAACCGCg -5'
26457 5' -60.5 NC_005357.1 + 16890 0.69 0.244174
Target:  5'- cGGCuACGGgGGCGcuGCCGGCGgcGGCa- -3'
miRNA:   3'- -CUG-UGCCaCCGC--CGGUCGCaaCCGcg -5'
26457 5' -60.5 NC_005357.1 + 21724 0.69 0.226028
Target:  5'- aACGCGGUacGGauGCCAcCGUUgGGCGCg -3'
miRNA:   3'- cUGUGCCA--CCgcCGGUcGCAA-CCGCG- -5'
26457 5' -60.5 NC_005357.1 + 15539 0.69 0.220238
Target:  5'- uGCACGGUGcCGGCCuccaCGUccaggucaaUGGCGCc -3'
miRNA:   3'- cUGUGCCACcGCCGGuc--GCA---------ACCGCG- -5'
26457 5' -60.5 NC_005357.1 + 12740 0.7 0.214575
Target:  5'- uGCugGGUGccGCGcCCAGaCGcUUGGCGCg -3'
miRNA:   3'- cUGugCCAC--CGCcGGUC-GC-AACCGCG- -5'
26457 5' -60.5 NC_005357.1 + 38836 0.7 0.214016
Target:  5'- uACACGGccaacacUGGCGGCC-GCGgaucGGUGUa -3'
miRNA:   3'- cUGUGCC-------ACCGCCGGuCGCaa--CCGCG- -5'
26457 5' -60.5 NC_005357.1 + 5085 0.7 0.214016
Target:  5'- --uGCGGUuggaacaGGCGGCCggcccAGCGUccggugcggcUGGCGCc -3'
miRNA:   3'- cugUGCCA-------CCGCCGG-----UCGCA----------ACCGCG- -5'
26457 5' -60.5 NC_005357.1 + 7482 0.7 0.209038
Target:  5'- aGugGCGGUGGUauaGGCCccuugcaacuGGCGgcGcGCGCu -3'
miRNA:   3'- -CugUGCCACCG---CCGG----------UCGCaaC-CGCG- -5'
26457 5' -60.5 NC_005357.1 + 16581 0.7 0.209038
Target:  5'- cGACGCGccGGacgaGGCCgaccacgcgauGGUGUUGGCGCc -3'
miRNA:   3'- -CUGUGCcaCCg---CCGG-----------UCGCAACCGCG- -5'
26457 5' -60.5 NC_005357.1 + 29394 0.7 0.203624
Target:  5'- cGGCGCGGUa--GGCCAGCagaaucuugGGCGCg -3'
miRNA:   3'- -CUGUGCCAccgCCGGUCGcaa------CCGCG- -5'
26457 5' -60.5 NC_005357.1 + 8557 0.71 0.183172
Target:  5'- cGCGCcGaUGGCGGgCAGCGacaGGCGCg -3'
miRNA:   3'- cUGUGcC-ACCGCCgGUCGCaa-CCGCG- -5'
26457 5' -60.5 NC_005357.1 + 22231 0.71 0.183172
Target:  5'- uGACGCGGcccUGGUugucGGCC-GCGaUGGCGUa -3'
miRNA:   3'- -CUGUGCC---ACCG----CCGGuCGCaACCGCG- -5'
26457 5' -60.5 NC_005357.1 + 16245 0.71 0.17835
Target:  5'- cGGCACGauaUGGCGGauGGCGUUGGCcucGCg -3'
miRNA:   3'- -CUGUGCc--ACCGCCggUCGCAACCG---CG- -5'
26457 5' -60.5 NC_005357.1 + 21287 0.71 0.173642
Target:  5'- gGGCGCGGacacGGCGGCCAaGCug-GGCaGCg -3'
miRNA:   3'- -CUGUGCCa---CCGCCGGU-CGcaaCCG-CG- -5'
26457 5' -60.5 NC_005357.1 + 212 0.71 0.173642
Target:  5'- cGACACGGcgaacUGGCGcaccUCGGCaUUGGCGCg -3'
miRNA:   3'- -CUGUGCC-----ACCGCc---GGUCGcAACCGCG- -5'
26457 5' -60.5 NC_005357.1 + 9000 0.71 0.164557
Target:  5'- cGCGCGGgGGCGcuuCCAGCaGgcGGCGCa -3'
miRNA:   3'- cUGUGCCaCCGCc--GGUCG-CaaCCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.