miRNA display CGI


Results 1 - 20 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26457 5' -60.5 NC_005357.1 + 212 0.71 0.173642
Target:  5'- cGACACGGcgaacUGGCGcaccUCGGCaUUGGCGCg -3'
miRNA:   3'- -CUGUGCC-----ACCGCc---GGUCGcAACCGCG- -5'
26457 5' -60.5 NC_005357.1 + 446 0.68 0.284082
Target:  5'- -gUugGGcugcUGcGCGGCCAGCuugcgGGCGCu -3'
miRNA:   3'- cuGugCC----AC-CGCCGGUCGcaa--CCGCG- -5'
26457 5' -60.5 NC_005357.1 + 1462 0.68 0.256933
Target:  5'- cGGCGCGGUcGGCGGCCuccuggcaGGCcgggguaucgcaGUgcuggucggacaUGGCGCc -3'
miRNA:   3'- -CUGUGCCA-CCGCCGG--------UCG------------CA------------ACCGCG- -5'
26457 5' -60.5 NC_005357.1 + 1710 0.67 0.328972
Target:  5'- -cCGUGGgccGGCGuGCCGGCGagGGCGUc -3'
miRNA:   3'- cuGUGCCa--CCGC-CGGUCGCaaCCGCG- -5'
26457 5' -60.5 NC_005357.1 + 1754 0.71 0.160176
Target:  5'- --gGCGGUcauGGcCGGCCuGCGccUGGCGCg -3'
miRNA:   3'- cugUGCCA---CC-GCCGGuCGCa-ACCGCG- -5'
26457 5' -60.5 NC_005357.1 + 3573 0.66 0.35414
Target:  5'- gGGCugGGcguacaccgauccgcGGCcGCCAGUGUUGGcCGUg -3'
miRNA:   3'- -CUGugCCa--------------CCGcCGGUCGCAACC-GCG- -5'
26457 5' -60.5 NC_005357.1 + 3738 0.66 0.361698
Target:  5'- cACGcCGGUGGUGGgCA-CGUcGGUGCc -3'
miRNA:   3'- cUGU-GCCACCGCCgGUcGCAaCCGCG- -5'
26457 5' -60.5 NC_005357.1 + 4277 0.68 0.284082
Target:  5'- cGGCAUGGUGaUGGCC-GUGUcGGCGg -3'
miRNA:   3'- -CUGUGCCACcGCCGGuCGCAaCCGCg -5'
26457 5' -60.5 NC_005357.1 + 5085 0.7 0.214016
Target:  5'- --uGCGGUuggaacaGGCGGCCggcccAGCGUccggugcggcUGGCGCc -3'
miRNA:   3'- cugUGCCA-------CCGCCGG-----UCGCA----------ACCGCG- -5'
26457 5' -60.5 NC_005357.1 + 6403 0.73 0.118529
Target:  5'- cGGCcCGGUGuagucGCGGCCcauGuCGUUGGCGCc -3'
miRNA:   3'- -CUGuGCCAC-----CGCCGGu--C-GCAACCGCG- -5'
26457 5' -60.5 NC_005357.1 + 7055 0.67 0.328182
Target:  5'- cGCAUGGccucgGGCGG-CAGCGUcguuugaacaggcUGGCGg -3'
miRNA:   3'- cUGUGCCa----CCGCCgGUCGCA-------------ACCGCg -5'
26457 5' -60.5 NC_005357.1 + 7422 0.69 0.250487
Target:  5'- gGGCAcCGGaUGGcCGGCCAGCaGUUcGGCu- -3'
miRNA:   3'- -CUGU-GCC-ACC-GCCGGUCG-CAA-CCGcg -5'
26457 5' -60.5 NC_005357.1 + 7482 0.7 0.209038
Target:  5'- aGugGCGGUGGUauaGGCCccuugcaacuGGCGgcGcGCGCu -3'
miRNA:   3'- -CugUGCCACCG---CCGG----------UCGCaaC-CGCG- -5'
26457 5' -60.5 NC_005357.1 + 7731 0.74 0.103136
Target:  5'- cGCACGcucGGCGGCCGGCuugcuGUUGGCGa -3'
miRNA:   3'- cUGUGCca-CCGCCGGUCG-----CAACCGCg -5'
26457 5' -60.5 NC_005357.1 + 8118 0.69 0.250487
Target:  5'- uGCACcgc-GCGGCCGGCGUUGGUuguggGCg -3'
miRNA:   3'- cUGUGccacCGCCGGUCGCAACCG-----CG- -5'
26457 5' -60.5 NC_005357.1 + 8557 0.71 0.183172
Target:  5'- cGCGCcGaUGGCGGgCAGCGacaGGCGCg -3'
miRNA:   3'- cUGUGcC-ACCGCCgGUCGCaa-CCGCG- -5'
26457 5' -60.5 NC_005357.1 + 8663 0.67 0.321139
Target:  5'- cGCGCGGUcGGCauugcguGCCgcgcgcaccucGGCGUUGGUGUa -3'
miRNA:   3'- cUGUGCCA-CCGc------CGG-----------UCGCAACCGCG- -5'
26457 5' -60.5 NC_005357.1 + 8931 0.67 0.335338
Target:  5'- --aGCGGUGGCcgugccggauucGCCAGCGgUGGcCGUg -3'
miRNA:   3'- cugUGCCACCGc-----------CGGUCGCaACC-GCG- -5'
26457 5' -60.5 NC_005357.1 + 9000 0.71 0.164557
Target:  5'- cGCGCGGgGGCGcuuCCAGCaGgcGGCGCa -3'
miRNA:   3'- cUGUGCCaCCGCc--GGUCG-CaaCCGCG- -5'
26457 5' -60.5 NC_005357.1 + 9002 0.67 0.335338
Target:  5'- --aGCGGUGGCcgugccgcgauaGCCAGCGgUGGcCGUg -3'
miRNA:   3'- cugUGCCACCGc-----------CGGUCGCaACC-GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.