miRNA display CGI


Results 1 - 20 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26457 5' -60.5 NC_005357.1 + 41732 0.66 0.361698
Target:  5'- --gGCGGUaucuugGGCGGcCCGGCc--GGCGCc -3'
miRNA:   3'- cugUGCCA------CCGCC-GGUCGcaaCCGCG- -5'
26457 5' -60.5 NC_005357.1 + 39499 0.66 0.378889
Target:  5'- cGACGCGGUGuG-GGCCGGCaugGGaauggGCa -3'
miRNA:   3'- -CUGUGCCAC-CgCCGGUCGcaaCCg----CG- -5'
26457 5' -60.5 NC_005357.1 + 38881 0.67 0.328972
Target:  5'- cGGCGCGGuUGGCGGgaCuGCGcgGuGUGCg -3'
miRNA:   3'- -CUGUGCC-ACCGCCg-GuCGCaaC-CGCG- -5'
26457 5' -60.5 NC_005357.1 + 38836 0.7 0.214016
Target:  5'- uACACGGccaacacUGGCGGCC-GCGgaucGGUGUa -3'
miRNA:   3'- cUGUGCC-------ACCGCCGGuCGCaa--CCGCG- -5'
26457 5' -60.5 NC_005357.1 + 38550 0.66 0.345056
Target:  5'- cGGCgACGGcagcGCGGCCuacAGCGacGGCGCc -3'
miRNA:   3'- -CUG-UGCCac--CGCCGG---UCGCaaCCGCG- -5'
26457 5' -60.5 NC_005357.1 + 38408 0.73 0.132357
Target:  5'- cGCGCGGcaugacgcUGGUGGCCGGCGcguuuugGGCGg -3'
miRNA:   3'- cUGUGCC--------ACCGCCGGUCGCaa-----CCGCg -5'
26457 5' -60.5 NC_005357.1 + 37071 0.72 0.151729
Target:  5'- gGGCGCGGUgcaGGCGGCCAcGCa---GCGCg -3'
miRNA:   3'- -CUGUGCCA---CCGCCGGU-CGcaacCGCG- -5'
26457 5' -60.5 NC_005357.1 + 36896 0.74 0.106056
Target:  5'- cGACcuggGCGGaaccugGGCGGCCGGCGUgccuacgacuuUGGCaGCa -3'
miRNA:   3'- -CUG----UGCCa-----CCGCCGGUCGCA-----------ACCG-CG- -5'
26457 5' -60.5 NC_005357.1 + 36851 1.1 0.00018
Target:  5'- cGACACGGUGGCGGCCAGCGUUGGCGCc -3'
miRNA:   3'- -CUGUGCCACCGCCGGUCGCAACCGCG- -5'
26457 5' -60.5 NC_005357.1 + 34039 0.66 0.376276
Target:  5'- cGACACGuG-GGCGGCgauucucgaagauuCGagcGCGgcGGCGCa -3'
miRNA:   3'- -CUGUGC-CaCCGCCG--------------GU---CGCaaCCGCG- -5'
26457 5' -60.5 NC_005357.1 + 31895 0.68 0.270233
Target:  5'- uGCGC-GUGGCGGCggaaAGCGUggccGGCGg -3'
miRNA:   3'- cUGUGcCACCGCCGg---UCGCAa---CCGCg -5'
26457 5' -60.5 NC_005357.1 + 31096 0.67 0.305896
Target:  5'- cACcuCGGU-GCaGGCCGGCGagUGGUGCg -3'
miRNA:   3'- cUGu-GCCAcCG-CCGGUCGCa-ACCGCG- -5'
26457 5' -60.5 NC_005357.1 + 30673 0.66 0.378889
Target:  5'- cGCugGGUguaGGCGGCgggaauuguCGGUGUugUGGCGg -3'
miRNA:   3'- cUGugCCA---CCGCCG---------GUCGCA--ACCGCg -5'
26457 5' -60.5 NC_005357.1 + 29394 0.7 0.203624
Target:  5'- cGGCGCGGUa--GGCCAGCagaaucuugGGCGCg -3'
miRNA:   3'- -CUGUGCCAccgCCGGUCGcaa------CCGCG- -5'
26457 5' -60.5 NC_005357.1 + 28885 0.66 0.370225
Target:  5'- gGGCAcCGaGUcaGGCGGCCGacaGUUcGGCGCg -3'
miRNA:   3'- -CUGU-GC-CA--CCGCCGGUcg-CAA-CCGCG- -5'
26457 5' -60.5 NC_005357.1 + 28758 0.66 0.361698
Target:  5'- aGCGCGGUgcgcuucucGGCGcGCaCGGCGUc-GCGCu -3'
miRNA:   3'- cUGUGCCA---------CCGC-CG-GUCGCAacCGCG- -5'
26457 5' -60.5 NC_005357.1 + 28662 0.68 0.284082
Target:  5'- aGAU-CGGUgccGGCGGCCucgccAGCGc-GGCGCg -3'
miRNA:   3'- -CUGuGCCA---CCGCCGG-----UCGCaaCCGCG- -5'
26457 5' -60.5 NC_005357.1 + 27836 0.67 0.305896
Target:  5'- -cCGCGGUGGC-GCCGGCc---GCGCc -3'
miRNA:   3'- cuGUGCCACCGcCGGUCGcaacCGCG- -5'
26457 5' -60.5 NC_005357.1 + 27633 0.66 0.373675
Target:  5'- gGGC-CGGUGGuUGGUCGGCaugaaagcuacccagGUgGGCGCc -3'
miRNA:   3'- -CUGuGCCACC-GCCGGUCG---------------CAaCCGCG- -5'
26457 5' -60.5 NC_005357.1 + 27434 0.66 0.353308
Target:  5'- -cCGCGcccGGCGGCCgcaGGCccUGGCGCu -3'
miRNA:   3'- cuGUGCca-CCGCCGG---UCGcaACCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.