miRNA display CGI


Results 41 - 60 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26459 5' -54.2 NC_005357.1 + 15588 0.7 0.43949
Target:  5'- cGCGCuGCGGAUgcACCGCGCCa---- -3'
miRNA:   3'- uCGCG-CGUCUAguUGGCGUGGcaaug -5'
26459 5' -54.2 NC_005357.1 + 8785 0.77 0.173039
Target:  5'- cGCgGCGCAcgaugGGUCGGCCGCGCCGgucagUACc -3'
miRNA:   3'- uCG-CGCGU-----CUAGUUGGCGUGGCa----AUG- -5'
26459 5' -54.2 NC_005357.1 + 28159 0.74 0.260842
Target:  5'- cGGUG-GuCAGAUCGACCaCGCCGUUGCc -3'
miRNA:   3'- -UCGCgC-GUCUAGUUGGcGUGGCAAUG- -5'
26459 5' -54.2 NC_005357.1 + 4036 0.71 0.390986
Target:  5'- uGcCGCGCGGGUCGAgCGCAgCCGg--- -3'
miRNA:   3'- uC-GCGCGUCUAGUUgGCGU-GGCaaug -5'
26459 5' -54.2 NC_005357.1 + 21962 0.73 0.27497
Target:  5'- cAGUGCGCGGAaCGACCGauaGCCGg--- -3'
miRNA:   3'- -UCGCGCGUCUaGUUGGCg--UGGCaaug -5'
26459 5' -54.2 NC_005357.1 + 10597 0.66 0.658714
Target:  5'- aGGCGCGCAGc----CUGCACCGc--- -3'
miRNA:   3'- -UCGCGCGUCuaguuGGCGUGGCaaug -5'
26459 5' -54.2 NC_005357.1 + 23742 0.69 0.469146
Target:  5'- uGGCGCGCAGcagCGccaugccggcgccACCGgGCCGaUGCg -3'
miRNA:   3'- -UCGCGCGUCua-GU-------------UGGCgUGGCaAUG- -5'
26459 5' -54.2 NC_005357.1 + 11431 0.69 0.48066
Target:  5'- cGGCGUGCAGGUCG-CCGauaaggcgcgaCACCGgcaGCu -3'
miRNA:   3'- -UCGCGCGUCUAGUuGGC-----------GUGGCaa-UG- -5'
26459 5' -54.2 NC_005357.1 + 28573 0.69 0.48066
Target:  5'- cGGCGCGCAcGUCGGCCaccgGCAgCGUg-- -3'
miRNA:   3'- -UCGCGCGUcUAGUUGG----CGUgGCAaug -5'
26459 5' -54.2 NC_005357.1 + 25801 0.67 0.635967
Target:  5'- cGGCGCGCucGGuAUCGuugauCUGCACCGg--- -3'
miRNA:   3'- -UCGCGCG--UC-UAGUu----GGCGUGGCaaug -5'
26459 5' -54.2 NC_005357.1 + 13972 0.67 0.635967
Target:  5'- aAGCGCGUAGGUCuuguACuCGCugGCCucgUGCu -3'
miRNA:   3'- -UCGCGCGUCUAGu---UG-GCG--UGGca-AUG- -5'
26459 5' -54.2 NC_005357.1 + 7973 0.67 0.635967
Target:  5'- cGGCGCGCA--UCGgguuuccaugucGCCGCGCuCGuUUGCc -3'
miRNA:   3'- -UCGCGCGUcuAGU------------UGGCGUG-GC-AAUG- -5'
26459 5' -54.2 NC_005357.1 + 27419 0.67 0.601845
Target:  5'- cGCGCGCcuGGcgC-ACCGCGCCcg-GCg -3'
miRNA:   3'- uCGCGCG--UCuaGuUGGCGUGGcaaUG- -5'
26459 5' -54.2 NC_005357.1 + 34883 0.68 0.567971
Target:  5'- uGGCGcCGCGGAUCgAGCaCGcCGCCGa--- -3'
miRNA:   3'- -UCGC-GCGUCUAG-UUG-GC-GUGGCaaug -5'
26459 5' -54.2 NC_005357.1 + 27796 0.68 0.556779
Target:  5'- cGCGCGCcGcgCAGCCGCAgcaCGUc-- -3'
miRNA:   3'- uCGCGCGuCuaGUUGGCGUg--GCAaug -5'
26459 5' -54.2 NC_005357.1 + 37476 0.68 0.556779
Target:  5'- cAGCGCGauacgCGGCUGCAUCGUgGCg -3'
miRNA:   3'- -UCGCGCgucuaGUUGGCGUGGCAaUG- -5'
26459 5' -54.2 NC_005357.1 + 20618 0.68 0.556779
Target:  5'- cGGCGuCGCAGGUCGgugucgGCCuGCGCuCGUUc- -3'
miRNA:   3'- -UCGC-GCGUCUAGU------UGG-CGUG-GCAAug -5'
26459 5' -54.2 NC_005357.1 + 11177 0.68 0.545651
Target:  5'- cGUGCGCuGGUCGGCCGUGgUGauggUGCg -3'
miRNA:   3'- uCGCGCGuCUAGUUGGCGUgGCa---AUG- -5'
26459 5' -54.2 NC_005357.1 + 23417 0.68 0.544542
Target:  5'- gAGCGCGCcGGUCAgugcgacGCCG-GCCGggaUGCg -3'
miRNA:   3'- -UCGCGCGuCUAGU-------UGGCgUGGCa--AUG- -5'
26459 5' -54.2 NC_005357.1 + 22081 0.69 0.511649
Target:  5'- cGGCGCGCGGcUCGAUgGCgugaaugACCGUaACc -3'
miRNA:   3'- -UCGCGCGUCuAGUUGgCG-------UGGCAaUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.