miRNA display CGI


Results 21 - 40 of 78 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26459 5' -54.2 NC_005357.1 + 28862 0.69 0.523621
Target:  5'- gAGCGCGCGu-UCAACauCGCCGUggGCa -3'
miRNA:   3'- -UCGCGCGUcuAGUUGgcGUGGCAa-UG- -5'
26459 5' -54.2 NC_005357.1 + 28764 0.72 0.340981
Target:  5'- cGGUGCGCGGucauAUCAccaaggacauggacgGCCGCGCCGgacuUGCu -3'
miRNA:   3'- -UCGCGCGUC----UAGU---------------UGGCGUGGCa---AUG- -5'
26459 5' -54.2 NC_005357.1 + 10728 0.66 0.692606
Target:  5'- cGGCGgGCuGGUCAggcgguGCUGCAgCaGUUACu -3'
miRNA:   3'- -UCGCgCGuCUAGU------UGGCGUgG-CAAUG- -5'
26459 5' -54.2 NC_005357.1 + 7486 0.66 0.647348
Target:  5'- -uCGaC-CAGAUCGACCGCGCCcagcagGUUGCc -3'
miRNA:   3'- ucGC-GcGUCUAGUUGGCGUGG------CAAUG- -5'
26459 5' -54.2 NC_005357.1 + 31612 0.68 0.534596
Target:  5'- gAGC-CGgaaGGAuUCAGCCGCGCCGagGCg -3'
miRNA:   3'- -UCGcGCg--UCU-AGUUGGCGUGGCaaUG- -5'
26459 5' -54.2 NC_005357.1 + 22982 0.72 0.329225
Target:  5'- uGGCGUGCAGccCGAgaagucCCGCACCG-UGCa -3'
miRNA:   3'- -UCGCGCGUCuaGUU------GGCGUGGCaAUG- -5'
26459 5' -54.2 NC_005357.1 + 28123 0.67 0.635967
Target:  5'- cGCGCGcCAGuUCAgcaacgacguggGCCGCAUCGccgACa -3'
miRNA:   3'- uCGCGC-GUCuAGU------------UGGCGUGGCaa-UG- -5'
26459 5' -54.2 NC_005357.1 + 30045 0.74 0.267831
Target:  5'- aAGCGCGCAGGcaUCGACuCGCcgACCGacGCg -3'
miRNA:   3'- -UCGCGCGUCU--AGUUG-GCG--UGGCaaUG- -5'
26459 5' -54.2 NC_005357.1 + 21256 0.75 0.234366
Target:  5'- aGGcCGCGCAGca-GGCCGCGCUGUUGa -3'
miRNA:   3'- -UC-GCGCGUCuagUUGGCGUGGCAAUg -5'
26459 5' -54.2 NC_005357.1 + 31231 0.69 0.48066
Target:  5'- -aUGCGCGGcAUUGACCGCACCa---- -3'
miRNA:   3'- ucGCGCGUC-UAGUUGGCGUGGcaaug -5'
26459 5' -54.2 NC_005357.1 + 14125 0.68 0.534596
Target:  5'- gAGCGCGCcGAguucuUCAAguuCUGCGCCGUg-- -3'
miRNA:   3'- -UCGCGCGuCU-----AGUU---GGCGUGGCAaug -5'
26459 5' -54.2 NC_005357.1 + 29362 0.66 0.703795
Target:  5'- gAGCGCcaauucaacauGCAGA-CGGCCGCACUcaaGCa -3'
miRNA:   3'- -UCGCG-----------CGUCUaGUUGGCGUGGcaaUG- -5'
26459 5' -54.2 NC_005357.1 + 35345 0.68 0.556779
Target:  5'- gGGCGCGCcguGGGUaGGCCGCGgCGUc-- -3'
miRNA:   3'- -UCGCGCG---UCUAgUUGGCGUgGCAaug -5'
26459 5' -54.2 NC_005357.1 + 10998 0.66 0.647348
Target:  5'- cGC-CGCAGAUCGuggCGuCGCCGUUGa -3'
miRNA:   3'- uCGcGCGUCUAGUug-GC-GUGGCAAUg -5'
26459 5' -54.2 NC_005357.1 + 19824 0.66 0.655306
Target:  5'- cGCGCGCGGggCGcuucuucgugcaagAUCGCaACCGcgGCg -3'
miRNA:   3'- uCGCGCGUCuaGU--------------UGGCG-UGGCaaUG- -5'
26459 5' -54.2 NC_005357.1 + 3009 0.66 0.692606
Target:  5'- aGGCGCgGCGGGUCAuaGCUGC-UCGUc-- -3'
miRNA:   3'- -UCGCG-CGUCUAGU--UGGCGuGGCAaug -5'
26459 5' -54.2 NC_005357.1 + 16809 0.69 0.491246
Target:  5'- cGCGCuGCuGG-CGACCGCGCCGc--- -3'
miRNA:   3'- uCGCG-CGuCUaGUUGGCGUGGCaaug -5'
26459 5' -54.2 NC_005357.1 + 833 0.71 0.381713
Target:  5'- cGCGCGCAGAgacagCgAGCCG-ACCGUgGCc -3'
miRNA:   3'- uCGCGCGUCUa----G-UUGGCgUGGCAaUG- -5'
26459 5' -54.2 NC_005357.1 + 3548 0.71 0.409969
Target:  5'- -cCGCGCAGucccgcCAACCGCGCCGc--- -3'
miRNA:   3'- ucGCGCGUCua----GUUGGCGUGGCaaug -5'
26459 5' -54.2 NC_005357.1 + 19858 0.67 0.635967
Target:  5'- cAGCGUGguGAguUCGGgCGUGCCGaagGCg -3'
miRNA:   3'- -UCGCGCguCU--AGUUgGCGUGGCaa-UG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.