miRNA display CGI


Results 21 - 40 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26461 3' -55.3 NC_005357.1 + 32005 0.67 0.601878
Target:  5'- aGCUGUuggaaaugaaaaGUg-GCgAGGCCAUCGGCGcGCu -3'
miRNA:   3'- aCGACG------------CAagCG-UCUGGUAGCUGC-CG- -5'
26461 3' -55.3 NC_005357.1 + 8428 0.68 0.524904
Target:  5'- cGCggggGCG-UCGCGGAaCAUCGGC-GCg -3'
miRNA:   3'- aCGa---CGCaAGCGUCUgGUAGCUGcCG- -5'
26461 3' -55.3 NC_005357.1 + 21274 0.68 0.491971
Target:  5'- cGCUGUugaaccaGggCGCGGACa--CGGCGGCc -3'
miRNA:   3'- aCGACG-------CaaGCGUCUGguaGCUGCCG- -5'
26461 3' -55.3 NC_005357.1 + 5841 0.66 0.646637
Target:  5'- aGCaccgUGCGgUCGaaguGGCUAUUGugGGCg -3'
miRNA:   3'- aCG----ACGCaAGCgu--CUGGUAGCugCCG- -5'
26461 3' -55.3 NC_005357.1 + 22439 0.67 0.568554
Target:  5'- aGUUGgcgaGUUcuaCGCGGA-CAUCGGCGGCc -3'
miRNA:   3'- aCGACg---CAA---GCGUCUgGUAGCUGCCG- -5'
26461 3' -55.3 NC_005357.1 + 9816 0.68 0.48779
Target:  5'- cGCgGCGUcgcggcccuugaCGCGGGCCAgcuuggucacagcgUCGGCGGUg -3'
miRNA:   3'- aCGaCGCAa-----------GCGUCUGGU--------------AGCUGCCG- -5'
26461 3' -55.3 NC_005357.1 + 19586 0.66 0.635442
Target:  5'- cGCaGCGcgCGCugucGGCUGUCGGCaGCg -3'
miRNA:   3'- aCGaCGCaaGCGu---CUGGUAGCUGcCG- -5'
26461 3' -55.3 NC_005357.1 + 29824 0.69 0.482587
Target:  5'- cGCgucgGCGccaugCGCAaauUCAUCGACGGCu -3'
miRNA:   3'- aCGa---CGCaa---GCGUcu-GGUAGCUGCCG- -5'
26461 3' -55.3 NC_005357.1 + 38933 0.66 0.623124
Target:  5'- cGCUGCGcUCugguacaGCGGGCCGUCGuucuCGuucGCg -3'
miRNA:   3'- aCGACGCaAG-------CGUCUGGUAGCu---GC---CG- -5'
26461 3' -55.3 NC_005357.1 + 35314 0.66 0.646637
Target:  5'- cGCUGgGcaucaCGCAGuCCAUcgugcgCGugGGCg -3'
miRNA:   3'- aCGACgCaa---GCGUCuGGUA------GCugCCG- -5'
26461 3' -55.3 NC_005357.1 + 19051 0.69 0.440996
Target:  5'- gUGCUGauuUUCaGCGGGCacgccaccguguuCAUCGGCGGCg -3'
miRNA:   3'- -ACGACgc-AAG-CGUCUG-------------GUAGCUGCCG- -5'
26461 3' -55.3 NC_005357.1 + 37805 0.67 0.54659
Target:  5'- -cCUGCGgcagCGCGGGCCAacaUUGGCcuGGCu -3'
miRNA:   3'- acGACGCaa--GCGUCUGGU---AGCUG--CCG- -5'
26461 3' -55.3 NC_005357.1 + 10058 0.68 0.503552
Target:  5'- cUGCUggGCGgcCG-GGGCC-UCGGCGGCg -3'
miRNA:   3'- -ACGA--CGCaaGCgUCUGGuAGCUGCCG- -5'
26461 3' -55.3 NC_005357.1 + 30215 0.66 0.668976
Target:  5'- gUGCUGCG-UC-CcGACCAggGGCaGGCa -3'
miRNA:   3'- -ACGACGCaAGcGuCUGGUagCUG-CCG- -5'
26461 3' -55.3 NC_005357.1 + 39764 0.68 0.503552
Target:  5'- cUGCucgaUGCGUacCGCaAGACC-UCGcACGGCa -3'
miRNA:   3'- -ACG----ACGCAa-GCG-UCUGGuAGC-UGCCG- -5'
26461 3' -55.3 NC_005357.1 + 15590 0.68 0.535709
Target:  5'- cGCUGCGgaUGCAccgcGCCAUCGGCcaGGa -3'
miRNA:   3'- aCGACGCaaGCGUc---UGGUAGCUG--CCg -5'
26461 3' -55.3 NC_005357.1 + 29057 0.68 0.535709
Target:  5'- gGCgGC--UCGUAGGCCAUCaGCGGg -3'
miRNA:   3'- aCGaCGcaAGCGUCUGGUAGcUGCCg -5'
26461 3' -55.3 NC_005357.1 + 4811 0.71 0.375879
Target:  5'- cGCUGCGggaUUGCuGGCCggCGACaGGUc -3'
miRNA:   3'- aCGACGCa--AGCGuCUGGuaGCUG-CCG- -5'
26461 3' -55.3 NC_005357.1 + 8559 0.66 0.654466
Target:  5'- cGCUcgaccucauccuggGCG-UCGUAGGCCGcgCGuGCGGCc -3'
miRNA:   3'- aCGA--------------CGCaAGCGUCUGGUa-GC-UGCCG- -5'
26461 3' -55.3 NC_005357.1 + 41284 0.66 0.657819
Target:  5'- cGacgGCGagCGCAaacGGCCGcugcucaugaUCGACGGCa -3'
miRNA:   3'- aCga-CGCaaGCGU---CUGGU----------AGCUGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.