miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26461 3' -55.3 NC_005357.1 + 35112 1.12 0.000416
Target:  5'- cUGCUGCGUUCGCAGACCAUCGACGGCg -3'
miRNA:   3'- -ACGACGCAAGCGUCUGGUAGCUGCCG- -5'
26461 3' -55.3 NC_005357.1 + 10058 0.68 0.503552
Target:  5'- cUGCUggGCGgcCG-GGGCC-UCGGCGGCg -3'
miRNA:   3'- -ACGA--CGCaaGCgUCUGGuAGCUGCCG- -5'
26461 3' -55.3 NC_005357.1 + 37805 0.67 0.54659
Target:  5'- -cCUGCGgcagCGCGGGCCAacaUUGGCcuGGCu -3'
miRNA:   3'- acGACGCaa--GCGUCUGGU---AGCUG--CCG- -5'
26461 3' -55.3 NC_005357.1 + 30833 0.66 0.668976
Target:  5'- cUGCUGCccg-GCGG-CCAgcCGGCGGCc -3'
miRNA:   3'- -ACGACGcaagCGUCuGGUa-GCUGCCG- -5'
26461 3' -55.3 NC_005357.1 + 1924 0.71 0.341219
Target:  5'- -cCUGCGUuccagUCGCGGAUCGUCuGCGGg -3'
miRNA:   3'- acGACGCA-----AGCGUCUGGUAGcUGCCg -5'
26461 3' -55.3 NC_005357.1 + 12282 0.71 0.349663
Target:  5'- cGCUGaUGUccgaCGCGGugCAggcCGGCGGCg -3'
miRNA:   3'- aCGAC-GCAa---GCGUCugGUa--GCUGCCG- -5'
26461 3' -55.3 NC_005357.1 + 14372 0.7 0.409042
Target:  5'- cGCUGUucgaGCAGACCGUCGccgacguguucuuCGGCg -3'
miRNA:   3'- aCGACGcaagCGUCUGGUAGCu------------GCCG- -5'
26461 3' -55.3 NC_005357.1 + 6194 0.7 0.412838
Target:  5'- cGCaGCGUUUGCAGG----UGACGGCg -3'
miRNA:   3'- aCGaCGCAAGCGUCUgguaGCUGCCG- -5'
26461 3' -55.3 NC_005357.1 + 30580 0.69 0.43214
Target:  5'- cGCgGgGUUCGCccAGGCCAaCcGCGGCg -3'
miRNA:   3'- aCGaCgCAAGCG--UCUGGUaGcUGCCG- -5'
26461 3' -55.3 NC_005357.1 + 39764 0.68 0.503552
Target:  5'- cUGCucgaUGCGUacCGCaAGACC-UCGcACGGCa -3'
miRNA:   3'- -ACG----ACGCAa-GCG-UCUGGuAGC-UGCCG- -5'
26461 3' -55.3 NC_005357.1 + 29824 0.69 0.482587
Target:  5'- cGCgucgGCGccaugCGCAaauUCAUCGACGGCu -3'
miRNA:   3'- aCGa---CGCaa---GCGUcu-GGUAGCUGCCG- -5'
26461 3' -55.3 NC_005357.1 + 38319 0.69 0.43214
Target:  5'- cGCUGCag-CGCAGGCUggCGgaaacaccACGGCg -3'
miRNA:   3'- aCGACGcaaGCGUCUGGuaGC--------UGCCG- -5'
26461 3' -55.3 NC_005357.1 + 33230 0.76 0.172325
Target:  5'- cGCcGCGccgccgaGCAGGCCAacgUCGACGGCg -3'
miRNA:   3'- aCGaCGCaag----CGUCUGGU---AGCUGCCG- -5'
26461 3' -55.3 NC_005357.1 + 9816 0.68 0.48779
Target:  5'- cGCgGCGUcgcggcccuugaCGCGGGCCAgcuuggucacagcgUCGGCGGUg -3'
miRNA:   3'- aCGaCGCAa-----------GCGUCUGGU--------------AGCUGCCG- -5'
26461 3' -55.3 NC_005357.1 + 20583 0.72 0.293681
Target:  5'- -aCUGCGcaaggCGCAGGCCAUCGACu-- -3'
miRNA:   3'- acGACGCaa---GCGUCUGGUAGCUGccg -5'
26461 3' -55.3 NC_005357.1 + 27009 0.7 0.422423
Target:  5'- aGCUGUGgUUGCGcGugCAUCGGucgucCGGCa -3'
miRNA:   3'- aCGACGCaAGCGU-CugGUAGCU-----GCCG- -5'
26461 3' -55.3 NC_005357.1 + 21274 0.68 0.491971
Target:  5'- cGCUGUugaaccaGggCGCGGACa--CGGCGGCc -3'
miRNA:   3'- aCGACG-------CaaGCGUCUGguaGCUGCCG- -5'
26461 3' -55.3 NC_005357.1 + 8428 0.68 0.524904
Target:  5'- cGCggggGCG-UCGCGGAaCAUCGGC-GCg -3'
miRNA:   3'- aCGa---CGCaAGCGUCUgGUAGCUGcCG- -5'
26461 3' -55.3 NC_005357.1 + 26656 0.71 0.341219
Target:  5'- aUGCcgucgUGCG-UCGC--ACCAUUGGCGGCa -3'
miRNA:   3'- -ACG-----ACGCaAGCGucUGGUAGCUGCCG- -5'
26461 3' -55.3 NC_005357.1 + 1145 0.71 0.366994
Target:  5'- aGCgGcCGUUUGCGcucGCCGUCGAUGGUg -3'
miRNA:   3'- aCGaC-GCAAGCGUc--UGGUAGCUGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.