miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26461 5' -59.3 NC_005357.1 + 11325 0.66 0.45008
Target:  5'- uCGGGCAgaACGGCCCauucguucAGGUCuuGCa -3'
miRNA:   3'- -GCUCGUgaUGCCGGGgc------UCCGGuuCG- -5'
26461 5' -59.3 NC_005357.1 + 36859 0.66 0.45008
Target:  5'- gGAGUAUgcCGGCCUCGAcaucgaaGCCAuGCg -3'
miRNA:   3'- gCUCGUGauGCCGGGGCUc------CGGUuCG- -5'
26461 5' -59.3 NC_005357.1 + 15584 0.66 0.440384
Target:  5'- aCGAcGCGCUGCGGaugcaCCgCGccaucGGCCAGGa -3'
miRNA:   3'- -GCU-CGUGAUGCCg----GG-GCu----CCGGUUCg -5'
26461 5' -59.3 NC_005357.1 + 16574 0.66 0.440384
Target:  5'- uGuAGCGCgACGcGCCggaCGAGGCCGAccacGCg -3'
miRNA:   3'- gC-UCGUGaUGC-CGGg--GCUCCGGUU----CG- -5'
26461 5' -59.3 NC_005357.1 + 33185 0.66 0.440384
Target:  5'- uGGGCGCccucggcACGGCCaCCGcuGGCUAucgcGGCa -3'
miRNA:   3'- gCUCGUGa------UGCCGG-GGCu-CCGGU----UCG- -5'
26461 5' -59.3 NC_005357.1 + 33784 0.66 0.440384
Target:  5'- gCGAGUACggcGCGGCCuggggcguuuCCGAagggcguaccGGCCAcGCc -3'
miRNA:   3'- -GCUCGUGa--UGCCGG----------GGCU----------CCGGUuCG- -5'
26461 5' -59.3 NC_005357.1 + 27054 0.66 0.440384
Target:  5'- --cGCACgcggACGcGCUcaCCGAGGUgAAGCa -3'
miRNA:   3'- gcuCGUGa---UGC-CGG--GGCUCCGgUUCG- -5'
26461 5' -59.3 NC_005357.1 + 29869 0.66 0.437499
Target:  5'- gCGcAGCGCgaggcCGGCaagaaauucaccgaCgCCGAGGUCGAGCa -3'
miRNA:   3'- -GC-UCGUGau---GCCG--------------G-GGCUCCGGUUCG- -5'
26461 5' -59.3 NC_005357.1 + 31856 0.66 0.430809
Target:  5'- uGGGUACUACG--CCCGAGGCgCuguuccAGCa -3'
miRNA:   3'- gCUCGUGAUGCcgGGGCUCCG-Gu-----UCG- -5'
26461 5' -59.3 NC_005357.1 + 41109 0.66 0.430809
Target:  5'- --cGCGCUuguCGGCCUgGuGGCCGucgcccugGGCg -3'
miRNA:   3'- gcuCGUGAu--GCCGGGgCuCCGGU--------UCG- -5'
26461 5' -59.3 NC_005357.1 + 21181 0.66 0.430809
Target:  5'- uGGGCAU--CGaCCCCGAGuugaucguGCCGGGCa -3'
miRNA:   3'- gCUCGUGauGCcGGGGCUC--------CGGUUCG- -5'
26461 5' -59.3 NC_005357.1 + 10969 0.66 0.430809
Target:  5'- gGGGaCACUG-GGCCaCCuGuucGGCCAGGCc -3'
miRNA:   3'- gCUC-GUGAUgCCGG-GG-Cu--CCGGUUCG- -5'
26461 5' -59.3 NC_005357.1 + 33337 0.66 0.430809
Target:  5'- -cGGCAagaACGGCCUCGcGGCCA-GUg -3'
miRNA:   3'- gcUCGUga-UGCCGGGGCuCCGGUuCG- -5'
26461 5' -59.3 NC_005357.1 + 40945 0.66 0.421356
Target:  5'- -cAGCACUGCGauaCCCCGGccuGCCAGGa -3'
miRNA:   3'- gcUCGUGAUGCc--GGGGCUc--CGGUUCg -5'
26461 5' -59.3 NC_005357.1 + 35271 0.66 0.420418
Target:  5'- -aAGCGCc-CGGCCCUGgucauccAGGCCGcAGCc -3'
miRNA:   3'- gcUCGUGauGCCGGGGC-------UCCGGU-UCG- -5'
26461 5' -59.3 NC_005357.1 + 14083 0.66 0.41203
Target:  5'- --cGCGC-GCuGCCCgaCGAGGCCAAGg -3'
miRNA:   3'- gcuCGUGaUGcCGGG--GCUCCGGUUCg -5'
26461 5' -59.3 NC_005357.1 + 15960 0.66 0.402832
Target:  5'- cCGAauGCcaACUgACGGaUgCCGAGGUCGAGCg -3'
miRNA:   3'- -GCU--CG--UGA-UGCC-GgGGCUCCGGUUCG- -5'
26461 5' -59.3 NC_005357.1 + 27725 0.67 0.393766
Target:  5'- aGGGCAUggaGGCgcaaCUGcAGGCCGGGCu -3'
miRNA:   3'- gCUCGUGaugCCGg---GGC-UCCGGUUCG- -5'
26461 5' -59.3 NC_005357.1 + 4883 0.67 0.393766
Target:  5'- -cAGCGCggcgacgGCGGCCUCGuuuucGGCCAcGGUg -3'
miRNA:   3'- gcUCGUGa------UGCCGGGGCu----CCGGU-UCG- -5'
26461 5' -59.3 NC_005357.1 + 22196 0.67 0.384833
Target:  5'- gGAGCAa---GGCaCCCaAGGCCAacAGCc -3'
miRNA:   3'- gCUCGUgaugCCG-GGGcUCCGGU--UCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.