miRNA display CGI


Results 41 - 60 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26461 5' -59.3 NC_005357.1 + 19196 0.7 0.229417
Target:  5'- gCGAgGCGCgguCGGUggCCGAGGCCGAGg -3'
miRNA:   3'- -GCU-CGUGau-GCCGg-GGCUCCGGUUCg -5'
26461 5' -59.3 NC_005357.1 + 18694 0.69 0.26756
Target:  5'- -uGGCGCUgcuGCGcGCCaCCGAGGCacuGGCc -3'
miRNA:   3'- gcUCGUGA---UGC-CGG-GGCUCCGgu-UCG- -5'
26461 5' -59.3 NC_005357.1 + 17436 0.73 0.145634
Target:  5'- uGAGCAg--UGGCCCCgccagcaucGAGGCCAGGUg -3'
miRNA:   3'- gCUCGUgauGCCGGGG---------CUCCGGUUCG- -5'
26461 5' -59.3 NC_005357.1 + 16574 0.66 0.440384
Target:  5'- uGuAGCGCgACGcGCCggaCGAGGCCGAccacGCg -3'
miRNA:   3'- gC-UCGUGaUGC-CGGg--GCUCCGGUU----CG- -5'
26461 5' -59.3 NC_005357.1 + 15960 0.66 0.402832
Target:  5'- cCGAauGCcaACUgACGGaUgCCGAGGUCGAGCg -3'
miRNA:   3'- -GCU--CG--UGA-UGCC-GgGGCUCCGGUUCG- -5'
26461 5' -59.3 NC_005357.1 + 15584 0.66 0.440384
Target:  5'- aCGAcGCGCUGCGGaugcaCCgCGccaucGGCCAGGa -3'
miRNA:   3'- -GCU-CGUGAUGCCg----GG-GCu----CCGGUUCg -5'
26461 5' -59.3 NC_005357.1 + 14995 0.79 0.055795
Target:  5'- aGGGC-CUGCGGCCgCCGGGcgcggugcGCCAGGCg -3'
miRNA:   3'- gCUCGuGAUGCCGG-GGCUC--------CGGUUCG- -5'
26461 5' -59.3 NC_005357.1 + 14083 0.66 0.41203
Target:  5'- --cGCGC-GCuGCCCgaCGAGGCCAAGg -3'
miRNA:   3'- gcuCGUGaUGcCGGG--GCUCCGGUUCg -5'
26461 5' -59.3 NC_005357.1 + 12883 0.67 0.370823
Target:  5'- cCGAGCACggcguggguguccucUGCGGCCagGGGGCacAGCc -3'
miRNA:   3'- -GCUCGUG---------------AUGCCGGggCUCCGguUCG- -5'
26461 5' -59.3 NC_005357.1 + 12665 0.68 0.318342
Target:  5'- uCGcGCACgcgccUGGCagcagCCGAGGCCGAGUu -3'
miRNA:   3'- -GCuCGUGau---GCCGg----GGCUCCGGUUCG- -5'
26461 5' -59.3 NC_005357.1 + 12436 0.67 0.367375
Target:  5'- gGAGCACgAUGGCCCguuCGAcGGCugcaucCAGGCc -3'
miRNA:   3'- gCUCGUGaUGCCGGG---GCU-CCG------GUUCG- -5'
26461 5' -59.3 NC_005357.1 + 11325 0.66 0.45008
Target:  5'- uCGGGCAgaACGGCCCauucguucAGGUCuuGCa -3'
miRNA:   3'- -GCUCGUgaUGCCGGGgc------UCCGGuuCG- -5'
26461 5' -59.3 NC_005357.1 + 11268 0.72 0.175636
Target:  5'- --uGCGCUGCGGCgCUGGgacgcucGGCCAGGUa -3'
miRNA:   3'- gcuCGUGAUGCCGgGGCU-------CCGGUUCG- -5'
26461 5' -59.3 NC_005357.1 + 10969 0.66 0.430809
Target:  5'- gGGGaCACUG-GGCCaCCuGuucGGCCAGGCc -3'
miRNA:   3'- gCUC-GUGAUgCCGG-GG-Cu--CCGGUUCG- -5'
26461 5' -59.3 NC_005357.1 + 10894 0.67 0.384833
Target:  5'- cCGAgGCGCUguuuccACGGCaacacagCGAGGCCcAGCa -3'
miRNA:   3'- -GCU-CGUGA------UGCCGgg-----GCUCCGGuUCG- -5'
26461 5' -59.3 NC_005357.1 + 10532 0.67 0.384833
Target:  5'- -aGGCACU-CGGCCUCGAuGGCgGAa- -3'
miRNA:   3'- gcUCGUGAuGCCGGGGCU-CCGgUUcg -5'
26461 5' -59.3 NC_005357.1 + 10341 0.7 0.23544
Target:  5'- uGAGCAacGCGGCCguguuggCGGGGCCGaugAGCa -3'
miRNA:   3'- gCUCGUgaUGCCGGg------GCUCCGGU---UCG- -5'
26461 5' -59.3 NC_005357.1 + 9561 0.75 0.110411
Target:  5'- uCGGGCGCgacaaucuCGGCgCCGAccgucugcGGCCAGGCg -3'
miRNA:   3'- -GCUCGUGau------GCCGgGGCU--------CCGGUUCG- -5'
26461 5' -59.3 NC_005357.1 + 9526 0.73 0.149673
Target:  5'- -uGGCaucauGCUGCGGCCCUGuucGGCCAGuGCg -3'
miRNA:   3'- gcUCG-----UGAUGCCGGGGCu--CCGGUU-CG- -5'
26461 5' -59.3 NC_005357.1 + 8422 0.74 0.120045
Target:  5'- cCGuGCGCUugucuACGGCCuuGAGGCUuuGGCc -3'
miRNA:   3'- -GCuCGUGA-----UGCCGGggCUCCGGu-UCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.