miRNA display CGI


Results 41 - 60 of 68 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26461 5' -59.3 NC_005357.1 + 32354 0.69 0.26756
Target:  5'- aGGuCGCUGCGGUCgccgCCGAGGCCccGGCc -3'
miRNA:   3'- gCUcGUGAUGCCGG----GGCUCCGGu-UCG- -5'
26461 5' -59.3 NC_005357.1 + 33784 0.66 0.440384
Target:  5'- gCGAGUACggcGCGGCCuggggcguuuCCGAagggcguaccGGCCAcGCc -3'
miRNA:   3'- -GCUCGUGa--UGCCGG----------GGCU----------CCGGUuCG- -5'
26461 5' -59.3 NC_005357.1 + 11325 0.66 0.45008
Target:  5'- uCGGGCAgaACGGCCCauucguucAGGUCuuGCa -3'
miRNA:   3'- -GCUCGUgaUGCCGGGgc------UCCGGuuCG- -5'
26461 5' -59.3 NC_005357.1 + 36074 0.71 0.195971
Target:  5'- -cAGCGCccCGGCCUUcGGGCCGGGCg -3'
miRNA:   3'- gcUCGUGauGCCGGGGcUCCGGUUCG- -5'
26461 5' -59.3 NC_005357.1 + 11268 0.72 0.175636
Target:  5'- --uGCGCUGCGGCgCUGGgacgcucGGCCAGGUa -3'
miRNA:   3'- gcuCGUGAUGCCGgGGCU-------CCGGUUCG- -5'
26461 5' -59.3 NC_005357.1 + 9526 0.73 0.149673
Target:  5'- -uGGCaucauGCUGCGGCCCUGuucGGCCAGuGCg -3'
miRNA:   3'- gcUCG-----UGAUGCCGGGGCu--CCGGUU-CG- -5'
26461 5' -59.3 NC_005357.1 + 36859 0.66 0.45008
Target:  5'- gGAGUAUgcCGGCCUCGAcaucgaaGCCAuGCg -3'
miRNA:   3'- gCUCGUGauGCCGGGGCUc------CGGUuCG- -5'
26461 5' -59.3 NC_005357.1 + 8422 0.74 0.120045
Target:  5'- cCGuGCGCUugucuACGGCCuuGAGGCUuuGGCc -3'
miRNA:   3'- -GCuCGUGA-----UGCCGGggCUCCGGu-UCG- -5'
26461 5' -59.3 NC_005357.1 + 34067 0.69 0.281367
Target:  5'- uCGAGCGCgGCGGCgCagGAGGUacuGGCa -3'
miRNA:   3'- -GCUCGUGaUGCCGgGg-CUCCGgu-UCG- -5'
26461 5' -59.3 NC_005357.1 + 1314 0.68 0.318342
Target:  5'- aGGGCG--ACGGCCaCC-AGGCCGacaAGCg -3'
miRNA:   3'- gCUCGUgaUGCCGG-GGcUCCGGU---UCG- -5'
26461 5' -59.3 NC_005357.1 + 29076 0.68 0.326161
Target:  5'- gCGGGuCAUccuCGGgCgCCGAGGUCAGGCc -3'
miRNA:   3'- -GCUC-GUGau-GCCgG-GGCUCCGGUUCG- -5'
26461 5' -59.3 NC_005357.1 + 15584 0.66 0.440384
Target:  5'- aCGAcGCGCUGCGGaugcaCCgCGccaucGGCCAGGa -3'
miRNA:   3'- -GCU-CGUGAUGCCg----GG-GCu----CCGGUUCg -5'
26461 5' -59.3 NC_005357.1 + 10969 0.66 0.430809
Target:  5'- gGGGaCACUG-GGCCaCCuGuucGGCCAGGCc -3'
miRNA:   3'- gCUC-GUGAUgCCGG-GG-Cu--CCGGUUCG- -5'
26461 5' -59.3 NC_005357.1 + 35271 0.66 0.420418
Target:  5'- -aAGCGCc-CGGCCCUGgucauccAGGCCGcAGCc -3'
miRNA:   3'- gcUCGUGauGCCGGGGC-------UCCGGU-UCG- -5'
26461 5' -59.3 NC_005357.1 + 4883 0.67 0.393766
Target:  5'- -cAGCGCggcgacgGCGGCCUCGuuuucGGCCAcGGUg -3'
miRNA:   3'- gcUCGUGa------UGCCGGGGCu----CCGGU-UCG- -5'
26461 5' -59.3 NC_005357.1 + 7276 0.67 0.376036
Target:  5'- ----uGCUGCuuGGCCUCGGGGCCGuAGUg -3'
miRNA:   3'- gcucgUGAUG--CCGGGGCUCCGGU-UCG- -5'
26461 5' -59.3 NC_005357.1 + 21316 0.67 0.358852
Target:  5'- uCGAGCACUuCGGgCuuGAugccGGCCAccGCg -3'
miRNA:   3'- -GCUCGUGAuGCCgGggCU----CCGGUu-CG- -5'
26461 5' -59.3 NC_005357.1 + 33185 0.66 0.440384
Target:  5'- uGGGCGCccucggcACGGCCaCCGcuGGCUAucgcGGCa -3'
miRNA:   3'- gCUCGUGa------UGCCGG-GGCu-CCGGU----UCG- -5'
26461 5' -59.3 NC_005357.1 + 31237 0.68 0.334123
Target:  5'- -cGGCGC-GCGGCCCagcuaCGAG-CCGGGCg -3'
miRNA:   3'- gcUCGUGaUGCCGGG-----GCUCcGGUUCG- -5'
26461 5' -59.3 NC_005357.1 + 42043 0.68 0.326161
Target:  5'- --cGCGCgcUGGCCgCGcucaaucggcAGGCCAAGCa -3'
miRNA:   3'- gcuCGUGauGCCGGgGC----------UCCGGUUCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.